Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135           27   9.1  
06_03_0290 - 19193707-19193752,19193822-19194090                       27   9.1  
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980     27   9.1  
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     27   9.1  

>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
          Length = 485

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 355 SESRPAEKIRRETQRADAWVRLHVD 281
           SES+P E  RR   R+ AW R+  D
Sbjct: 92  SESQPLETARRGALRSHAWARVGSD 116


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = +3

Query: 414 GARAVVSKSRPSWLSLCSPTCPGETGKAFGPP 509
           G     S+  P W   C   C   +  +F PP
Sbjct: 29  GGTPAASRGLPGWPGFCGVGCGSSSSSSFAPP 60


>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
          Length = 681

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 476 TGGRAKAQPRGAGFANNCPSAS 411
           +G + +AQPRG+GF  + P  S
Sbjct: 408 SGDKKRAQPRGSGFRKDMPPRS 429


>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 394 VVRSPSEALGQLLANPAPLG*AFARPPVLVKLE 492
           + R+ S  LG+LLA+P+PL      P +L +++
Sbjct: 7   LARAGSSLLGRLLASPSPLRAGLPPPSLLSRIQ 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,373
Number of Sequences: 37544
Number of extensions: 265243
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)