Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17577| Best HMM Match : fn3 (HMM E-Value=0)                         29   2.3  
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   28   4.1  
SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_17577| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1690

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 218 ALILGAGLGTPVTVFVELDKEVDVQPDPCISPLSFS 325
           A I   G+G P TVF+  D++    P P I+ ++ S
Sbjct: 848 AAITSIGIGPPATVFIWTDQDTPSAPPPNITAVNTS 883


>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 501 RRPFQFHQDRWASKGSAKRGGIC*QLPERLRRRPNNSR 388
           +RPF +  DRWA  G A  GG+     E  RRR +  R
Sbjct: 155 KRPFLYRGDRWAGHGGA--GGV----HEAARRRDHRKR 186


>SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 183 WIRKDVSTASTVTGSCMIRIRGVVSG 106
           W++K       V G+C +  RGV SG
Sbjct: 233 WVKKKTGCREVVFGACAVSWRGVFSG 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,019
Number of Sequences: 59808
Number of extensions: 272400
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)