Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ...    31   0.36 
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    29   2.5  
At2g33350.1 68415.m04088 hypothetical protein                          28   4.4  
At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting...    28   4.4  

>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
           similar to ubiquitin conjugating enzyme 6 from [Homo
           sapiens] GI:14029267, [Mus musculus] GI:14029263;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 237

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -2

Query: 499 KAFPVSPGQVGEQRLSQEGRDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRE 320
           K FP    +  +Q+L+++    LTT  +P K   +++S    + +   SE    E+ +  
Sbjct: 151 KLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNN 210

Query: 319 TQRADAWVRL 290
            Q   AW+ L
Sbjct: 211 KQGLPAWIIL 220


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 16  GLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGAS 147
           GLE   K + S   ++ D  +R++ RL+  A D +P     G S
Sbjct: 175 GLEHFGKALGSTQRKFEDGLLRNEQRLVGEALDSNPEKKLVGIS 218


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 22  ESIRKYMKSASERYFDKAMRHDNRLIVA 105
           E IR+YMK  +ER F+K +++  R  +A
Sbjct: 343 EKIRRYMKKRNERNFNKKIKYACRKTLA 370


>At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 307

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 382 CFANESTTGSESRPAEKIRRETQRADAWVRLHVDLFVEFDEYGYRG 245
           CF +EST  ++  P +K+ +  +R D W+   +  F  F++ G  G
Sbjct: 232 CF-DESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDF--FNDGGLMG 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,282,778
Number of Sequences: 28952
Number of extensions: 187887
Number of successful extensions: 451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)