Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 32 0.32
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 29 1.7
01_06_0314 - 28410897-28410902,28410995-28411054,28411149-28411697 29 1.7
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 29 3.0
06_03_1478 - 30420097-30420651 29 3.0
06_02_0011 - 10569471-10572245 28 4.0
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083... 28 4.0
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 28 5.2
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 28 5.2
01_02_0029 - 10344787-10344828,10345474-10345564,10346234-103462... 28 5.2
12_01_0257 + 1898950-1899636 27 9.1
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531... 27 9.1
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70... 27 9.1
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 27 9.1
03_04_0124 - 17480282-17480647 27 9.1
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 31.9 bits (69), Expect = 0.32
Identities = 25/94 (26%), Positives = 37/94 (39%)
Frame = -1
Query: 515 IVPFL*DPTCRTSSSWQAANSPGATTILSNTVCSFVTRLKTAA*SVGDGHSSVCLFRRA* 336
I FL C +S G+ LSNT CS V + SV +S R+
Sbjct: 6 IAVFLSSVICAVASDMGGDPGGGSELHLSNTTCSKVKMVSQVRPSVNQMETSDDATRQVI 65
Query: 335 VSTESSGAGLHLGKAGSANKRSKGGRSIKTRGLL 234
+T + G +G G+ + + GR + G L
Sbjct: 66 PNTRNEG---RMGPTGNTGLKRRKGRGLTINGTL 96
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 262 PPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 399
PP +L + +FP PA D +L L +RH C P P V+
Sbjct: 17 PPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63
>01_06_0314 - 28410897-28410902,28410995-28411054,28411149-28411697
Length = 204
Score = 29.5 bits (63), Expect = 1.7
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +3
Query: 216 DGASTLQQTPSLDASPALRPFI---SRTR-----FS*MQTGSRRL-RAHSGPSKEAHGAM 368
+ +S + +P+ +PA P SRTR F + G+ RL R P+ A
Sbjct: 14 NSSSPSEDSPAPAPAPAPAPAPPQPSRTRLHSFSFPTLSWGTHRLLRCSKNPASSPPPAA 73
Query: 369 SVTYRSSSCFEPRHETADSIGQYCC---GSRRICSLPTRRSAASWVLQEGDDD 518
T S + H + D +G C G +R +L TRRSA + EG DD
Sbjct: 74 PDT-PSPDKEKAAHRSTDGVGGGCSPQRGPQRPWNLRTRRSATAAPRPEGSDD 125
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 195 RYPRPGRDGASTLQQTPSLDASPALRP-FISRTRFS*MQTGSRRLRAHSGPSKEAHGAMS 371
RY P G+S+ QQ PA RP F+S+ + + Q G+R R + + G
Sbjct: 55 RYTNPYPRGSSSQQQQQQ--PHPAPRPQFVSQQQQN--QQGNRAPRPLAPAVQPGQGRRD 110
Query: 372 VTYRSS---SCFEPRH 410
V + +CFEPRH
Sbjct: 111 VQGQQRLCFNCFEPRH 126
>06_03_1478 - 30420097-30420651
Length = 184
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 208 GRGYRVHHDRCRAPFQEKQFILG*R 134
G+ YR DRC+APF+ +Q + G R
Sbjct: 103 GKRYRYVCDRCKAPFETRQALGGHR 127
>06_02_0011 - 10569471-10572245
Length = 924
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +1
Query: 289 PAFPRCKPAPDDSVLTQALLKRHTEL--CPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFA 462
PAFP K P SVL L R+ C S + A++++++ L T L +
Sbjct: 227 PAFPPYKHQPATSVLRSNYLDRYKLFVSCNSTSFVASLVTVILLLSTELSKHGIRSKAVI 286
Query: 463 ACQLEEVR-QVGSYKKG 510
C + ++ VG+Y G
Sbjct: 287 VCVVADLLCLVGAYAAG 303
>04_03_0229 -
13006869-13007017,13007925-13008089,13008178-13008332,
13010276-13011021
Length = 404
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 198 YPRPGRDGASTLQQTPSLDASPAL 269
+PR G DG L QTPS A+ AL
Sbjct: 83 FPRRGEDGVHLLSQTPSSPAAWAL 106
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = +3
Query: 219 GASTLQQTPSLDASPALRPFISRTR---FS*MQTGSRRLRAHSGPSKEAHGAMSVTYRSS 389
G S Q LD P +R + F+ QTGS + SGP V YR+
Sbjct: 441 GPSATQDEVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPKNMTEQTQGVNYRAL 500
Query: 390 S 392
S
Sbjct: 501 S 501
>02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +3
Query: 219 GASTLQQTPSLDASPALRPFISRTR---FS*MQTGSRRLRAHSGPSKEAHGAMSVTYRS- 386
G T Q D P +R + F+ QTGS + GP K V YR+
Sbjct: 888 GPITTQDAVFKDIQPLIRSVLDGYNVCIFAYGQTGSGKTYTMMGPEKATEKEWGVNYRAL 947
Query: 387 SSCFEPRHETADSI 428
+ F H+ D+I
Sbjct: 948 NDLFNISHDRRDTI 961
>01_02_0029 -
10344787-10344828,10345474-10345564,10346234-10346295,
10346531-10346690,10347641-10347948
Length = 220
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 192 TRYPRPGRDGASTLQQTPSLDASPALRPFISRTRFS*MQTGSRRLRAHSGPSKEAH 359
T P DGA + +PAL F+ ++ +RR +++SG S AH
Sbjct: 129 TSSPSAAADGAEVIPSCRRRRQTPALPQFVHKSARIDFSFPARRRKSNSGGSSMAH 184
>12_01_0257 + 1898950-1899636
Length = 228
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 468 PTRRSAASWVLQEGDDDG 521
PTRR+AASW+ D DG
Sbjct: 58 PTRRTAASWLAVTFDGDG 75
>05_04_0375 +
20750170-20751011,20751707-20751865,20752894-20753146,
20753287-20753316
Length = 427
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 174 RHRSWWTRYPRPGRDGASTLQQ 239
R R WW P P GAS+L++
Sbjct: 33 RRRWWWWAAPLPSASGASSLER 54
>04_01_0070 -
706640-706747,707221-707307,707397-707502,707585-707693,
707766-708145,708508-708601,709351-709475,709633-709674,
710822-710892,710979-711060,711157-711277,712404-712713
Length = 544
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 262 PPFDLLLAEPAFPRCKPAPD 321
PPF L LA P FP P PD
Sbjct: 36 PPFLLDLASPPFPPKNPRPD 55
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 152 IYFRLTFSLCFALGMLMT*KLCFHKFFFNYFYARAYIVF 36
I R + S+ F + L FH +FF+Y Y +Y+ F
Sbjct: 528 ISVRTSISMQFFPRFFLLYFLVFHIYFFSYTYGFSYLAF 566
>03_04_0124 - 17480282-17480647
Length = 121
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 171 ARHRSWWTRYPRPGRDGASTLQQT 242
A R WW +PGRDGA+ L +T
Sbjct: 2 AELRRWWED-AQPGRDGAAALVET 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,921,859
Number of Sequences: 37544
Number of extensions: 282308
Number of successful extensions: 764
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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