Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 68   5e-12
SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)          29   2.3  
SB_46040| Best HMM Match : PTN_MK_N (HMM E-Value=5.4)                  29   3.1  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   4.1  
SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           27   7.1  
SB_46699| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           27   7.1  
SB_7389| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)            27   7.1  
SB_24397| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   8.7  

>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 35/60 (58%), Positives = 47/60 (78%)
 Frame = +1

Query: 340 ALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFAACQLEEVRQVGSYKKGTMM 519
           ALLKR+T+L PS  +QA V +LVTK+ +VLDN++V P + A   +EEVR VGS+KKGTM+
Sbjct: 378 ALLKRNTKLTPSQQEQALVQNLVTKVTSVLDNLIVDP-DTAEFGVEEVRAVGSHKKGTML 436


>SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)
          Length = 922

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 370 PSPTDQAAVLSLVTKLQTVLD-NIVVAPGE--FAACQLEEVRQVG 495
           PS   Q  + SLVTK++T  D N++V  G+   +   LEEVR+ G
Sbjct: 345 PSTGYQTKIASLVTKIKTANDVNVIVLWGDPTTSIAFLEEVRKQG 389


>SB_46040| Best HMM Match : PTN_MK_N (HMM E-Value=5.4)
          Length = 248

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 333 HSGPSKEAHGAMSVTYRSSSCFEPRHETADSIGQ 434
           H  P K AHG + + +R  SC E R ++ +   Q
Sbjct: 63  HGKPVKSAHGDIGLHHREPSCSEIRGDSCEDDAQ 96


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 265 PFDLLL-AEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTV 426
           PF L++ AE    R KPAP        +   H  L P P     + S+V K Q V
Sbjct: 417 PFALVMEAEREHARAKPAPVQDRNEAKITTEHVRLTPVPGIVVKIESMVDKPQFV 471


>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 370 PSPTDQAAVLSLVTKLQTVLDNIVVAPGEF 459
           PSP      L  VT ++ +LD +  +PGEF
Sbjct: 48  PSPQTTGPDLEAVTFVKDILDQLTESPGEF 77


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 277 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 456
           LL    FPRC   P+   LT   +   ++ C +   Q + L +V +   V  + ++A   
Sbjct: 628 LLENLKFPRCLKPPNFGTLTSTQVCNFSDACHNGIGQVSYLRMVNEKGEVHVSFLMAKSR 687

Query: 457 FA 462
            A
Sbjct: 688 VA 689


>SB_46699| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 517

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 277 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 456
           LL    FPRC   P+   LT   +   ++ C +   Q + L +V +   V  + ++A   
Sbjct: 286 LLENLKFPRCLKPPNFGTLTSTQVCNFSDACHNGIGQVSYLRMVNEKGEVHVSFLMAKSR 345

Query: 457 FA 462
            A
Sbjct: 346 VA 347


>SB_7389| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 308

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 277 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 456
           LL    FPRC   P+   LT   +   ++ C +   Q + L +V +   V  + ++A   
Sbjct: 77  LLENLKFPRCLKPPNFGTLTSTQVCNFSDACHNGIGQVSYLRMVNEKGEVHVSFLMAKSR 136

Query: 457 FA 462
            A
Sbjct: 137 VA 138


>SB_24397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 24.2 bits (50), Expect(2) = 8.7
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 321 RLRAHSGPSKEAHGAMSVTYRSSSCFEPRHETADSIGQYCCGSR 452
           ++R  SG S    G  +   R S C   +      I   CCG+R
Sbjct: 121 QIRRKSGISPACCGTRNYDARFSMCCGGQVRRKSGISPACCGTR 164



 Score = 21.4 bits (43), Expect(2) = 8.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 438 CCGSRRICS 464
           CCG  R+CS
Sbjct: 201 CCGYNRVCS 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,916,061
Number of Sequences: 59808
Number of extensions: 310079
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)