Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52250.1 68418.m06485 transducin family protein / WD-40 repea...    30   0.82 
At5g53440.1 68418.m06641 expressed protein                             27   5.8  
At4g33985.1 68417.m04822 expressed protein                             27   7.7  
At3g07840.1 68416.m00959 polygalacturonase, putative / pectinase...    27   7.7  
At3g07830.1 68416.m00958 polygalacturonase, putative / pectinase...    27   7.7  

>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to photomorphogenesis repressor PnCOP1
           (GI:11127996) [Ipomoea nil]
          Length = 385

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 375 TYRSSSCFEPRHETADSIGQYCCGSRRICSLPTRRSAASWVLQEGDDDG 521
           +YR SS  E R +   +   Y C   ++ SL  R   +  V+  GD DG
Sbjct: 97  SYRLSSLLESRDDHVTASESYICTPAKLSSLKWRPDFSGRVIGSGDYDG 145


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 336 SGPSKEAHGAMSVTYRSSSCFEPRHETADSIGQYC 440
           + P+KE H +   T    +  +P  ET D+  +YC
Sbjct: 820 TSPAKELHASSPKTMEEVAADDPVSETIDNTERYC 854


>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 399 EPR-HETADSIGQYCCGSRRICSLPTRRSAASWVLQEGDD 515
           +PR  ET  ++G YC  +++  S  +R S+ S +  EG++
Sbjct: 75  DPRLSETLPALGLYCAVNKQYSSRLSRTSSLSSIASEGEN 114


>At3g07840.1 68416.m00959 polygalacturonase, putative / pectinase,
           putative strong similarity to polygalacturonase PGA3
           [Arabidopsis thaliana] GI:3152948; contains
           non-consensus AA acceptor splice site at exon 3
          Length = 401

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 325 SVLTQALLKRHTELCPSPTDQAAVLS 402
           S +TQALLK  T  C +PT    V++
Sbjct: 34  SDITQALLKAFTSACQAPTASKVVIT 59


>At3g07830.1 68416.m00958 polygalacturonase, putative / pectinase,
           putative strong similarity to polygalacturonase (PGA3)
           GI:3152948 from [Arabidopsis thaliana]
          Length = 397

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 325 SVLTQALLKRHTELCPSPTDQAAVL 399
           S +TQALL+  T  C SPT +  V+
Sbjct: 34  SDITQALLRAFTTACQSPTPRKVVI 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,992,639
Number of Sequences: 28952
Number of extensions: 213952
Number of successful extensions: 480
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)