Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D08f
         (467 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.11 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   0.33 
UniRef50_Q54YL7 Cluster: Putative uncharacterized protein; n=1; ...    35   0.77 
UniRef50_UPI0000E4951F Cluster: PREDICTED: similar to ORF2-encod...    34   1.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.9 bits (84), Expect = 0.11
 Identities = 20/41 (48%), Positives = 22/41 (53%)
 Frame = +3

Query: 3   RRVN*PTHSPLSFSPDLLSGSGFRSGGKFCEARLLLVFVLA 125
           RR   P   P+ F       S FRS G+FCEA LLL  VLA
Sbjct: 65  RRATNPKTQPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLA 105


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.3 bits (80), Expect = 0.33
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +3

Query: 30  PLSFSPDLLSGSGFRSGGKF 89
           PLSFSPDLLSGS FR+G ++
Sbjct: 396 PLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q54YL7 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 601

 Score = 35.1 bits (77), Expect = 0.77
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 237 SNVLLLAPTNTKLYSYTDYKVYKRNQCLLVELNSS 341
           +N L+ +PTN KLY+  + K +K N+C+L   N S
Sbjct: 138 NNDLITSPTNLKLYTKIELKHHKDNECILSSSNCS 172


>UniRef50_UPI0000E4951F Cluster: PREDICTED: similar to ORF2-encoded
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to ORF2-encoded protein -
           Strongylocentrotus purpuratus
          Length = 406

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 421 SVMICNCYAEHSRWTTKQLVVRSAGSRDEFNSTSK 317
           S++ICNC A    W    L +R A S D F S+ K
Sbjct: 364 SMLICNCVAAPWLWNRLSLEIRDASSLDSFKSSLK 398


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,071,026
Number of Sequences: 1657284
Number of extensions: 6437247
Number of successful extensions: 13093
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13091
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)