Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D08f
         (467 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   1.4  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    23   1.9  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    23   1.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   4.3  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    20   9.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 213 KEHRS*SQSNVLLLAPTNTKLYSYTDYKVY 302
           ++HRS   S+  +L+ TN+    Y +Y  Y
Sbjct: 230 EQHRSWCSSSQPVLSTTNSTTNCYNNYPYY 259


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 13  INPPTAH*VSRRIFSVGRVSDPVVNSAKHGSC 108
           +NP      + R    GR   P VN+ KH SC
Sbjct: 326 MNPVVYGVFNIRARRTGRKVSPRVNTIKHTSC 357


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 13  INPPTAH*VSRRIFSVGRVSDPVVNSAKHGSC 108
           +NP      + R    GR   P VN+ KH SC
Sbjct: 326 MNPVVYGVFNIRARRTGRKVSPRVNTIKHTSC 357


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 309 NQCLLVELNSSREPALRTTSCFVVQRLCSA 398
           N C  VE + +R P    T C +    CSA
Sbjct: 148 NSCT-VETDPNRAPDCDPTQCVLPDCFCSA 176


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 174 ADILKAISLGRKKK 215
           A +LK+ S GRK+K
Sbjct: 54  APVLKSRSFGRKRK 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,056
Number of Sequences: 336
Number of extensions: 1576
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)