Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D08f
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   2.5  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   3.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   5.8  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   7.6  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   7.6  

>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 270 KLYSYTDYKVYKRNQCLLVELNSSREPAL 356
           +L   T + +Y+ N CLL   +++R+P+L
Sbjct: 2   RLPRITKFALYRENPCLLPLYHATRDPSL 30


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 291 YKVYKRNQCLLVELNSSREPALRTTSCFVVQRLCSA*QLQIMTDIVEF 434
           Y +  RNQ  +   NS+ +P  R +  FV+  L     L    D++E+
Sbjct: 245 YNLRNRNQATIT--NSNSKPQTRRSKIFVISLLGYGVYLLAFLDLIEY 290


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 180 ILKAISLGRKKKEHRS*SQSNVLLLAPTNT-KLYSYTDYKVYKRNQCLLVELNSS 341
           + +  +LGR K + +  +QS V   A TNT +  S   +  +K N  +  E N+S
Sbjct: 104 VARITTLGRPKLQVQQEAQSEVYQRASTNTQQQVSNVSHGNFKPNSSVNTEPNTS 158


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 366 WLSAALVPVTNSIQLVNIDSVYRPCNLCNYRALYLS 259
           W+S  + PV  S+ L+ +D V  P      RA YL+
Sbjct: 89  WMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLT 124


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 231 SQSNVLLLAPTNTKLYSYTDYKVYKRNQC 317
           SQS  +    ++   Y Y DY+VY+ + C
Sbjct: 484 SQSGNINSDNSDLSNYPYNDYRVYRMSHC 512


>SPBC409.12c |||nuclear telomere cap complex subunit
          Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 59 WVGFPIRW 82
          W+GFPIRW
Sbjct: 42 WMGFPIRW 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,138
Number of Sequences: 5004
Number of extensions: 27832
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)