Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D08f
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199...    29   2.5  
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599     27   7.5  
05_01_0051 - 345125-345693,345833-346925                               27   10.0 

>04_03_0819 +
           20018496-20019487,20019587-20019721,20019834-20019978,
           20020135-20020416,20020649-20020910,20021028-20021224,
           20021315-20021425,20022341-20022392,20022442-20022584,
           20023121-20023210,20023300-20023800,20024108-20024176,
           20024866-20025011,20025475-20025530,20026140-20026286,
           20027405-20027530,20027608-20027876,20028026-20028127
          Length = 1274

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +1

Query: 337 RHGNQRCGQPVVLSSNGCALRNSYRS 414
           RHG +R  + ++LS++GCALR ++RS
Sbjct: 68  RHGRRR--RALLLSTSGCALRLTHRS 91


>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
          Length = 99

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 207 KKKEHRS*SQSNVLLLAPTNTKLYSYTDYKVYKRNQCLLVELNSSREPALRTTSCFVVQR 386
           KK++ RS +      +AP+++K     + +  K  +  L EL+S+    +RTT C    R
Sbjct: 31  KKRQKRSKNSEKEKAVAPSSSKKMDREELE--KTIRGFLKELDSTEAAPMRTTGCTSAMR 88


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 460 LQLVYNKILNSTISVMICNCYAEHSRWTTKQLVVRSAGSRDE 335
           L+L+  +  NS    ++CN YA   RW     V      RDE
Sbjct: 458 LRLIELEPNNSVHYALLCNVYASAGRWEDVHRVKAIIKERDE 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,372
Number of Sequences: 37544
Number of extensions: 176898
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)