Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D08f
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21326| Best HMM Match : Myosin_head (HMM E-Value=5e-05)             29   2.5  
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_21326| Best HMM Match : Myosin_head (HMM E-Value=5e-05)
          Length = 469

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 37  VSRRIFSVGRVSDPVVNSAKHGS 105
           ++RRI S  R S PV+N + HGS
Sbjct: 44  IARRINSFKRQSSPVINGSPHGS 66


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 306 RNQCLLVELNSSREPALRTTSCFVVQRLCSA*QLQIMTDIV 428
           RN+ ++VE+ +S EPA +T        +C   Q Q   D++
Sbjct: 781 RNEDIVVEVPASNEPAAKTEDEIRKAEMCKFEQAQEAEDLI 821


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,069
Number of Sequences: 59808
Number of extensions: 203792
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)