Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D08f
         (467 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029416-1|ABK57073.1|  261|Drosophila melanogaster IP02555p pro...    29   4.1  
BT023280-1|AAY55696.1|  260|Drosophila melanogaster IP02554p pro...    29   4.1  
AE013599-1710|AAF58377.1|  260|Drosophila melanogaster CG4812-PA...    29   4.1  

>BT029416-1|ABK57073.1|  261|Drosophila melanogaster IP02555p
           protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 345 PVTNSIQLVNIDSVYRPCNLCNYRALYLSALEAERWI 235
           P+ +  QLV + S  R C + NY  +Y +  E   W+
Sbjct: 218 PLVSGGQLVGVVSWGRDCAVANYPGVYANIAELRDWV 254


>BT023280-1|AAY55696.1|  260|Drosophila melanogaster IP02554p
           protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 345 PVTNSIQLVNIDSVYRPCNLCNYRALYLSALEAERWI 235
           P+ +  QLV + S  R C + NY  +Y +  E   W+
Sbjct: 217 PLVSGGQLVGVVSWGRDCAVANYPGVYANIAELRDWV 253


>AE013599-1710|AAF58377.1|  260|Drosophila melanogaster CG4812-PA
           protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 345 PVTNSIQLVNIDSVYRPCNLCNYRALYLSALEAERWI 235
           P+ +  QLV + S  R C + NY  +Y +  E   W+
Sbjct: 217 PLVSGGQLVGVVSWGRDCAVANYPGVYANIAELRDWV 253


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,168,390
Number of Sequences: 53049
Number of extensions: 299430
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)