Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D08f
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical
           protein F59A1.3 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -3

Query: 369 NWLSAALVPVTNSIQLVNIDSVYRPCNLCNYRALYL 262
           ++++A+L  ++NSI L+ +     P N+CNYR L L
Sbjct: 11  SYINASLAFISNSI-LICLIITKTPRNMCNYRHLML 45


>AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical
           protein Y48G8AR.3 protein.
          Length = 112

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 337 RHGNQRCGQPVVLSSNGCALRNSYRS*PI--LLNLRFYYIPIEE 462
           ++GNQRC +  +     C LRN  +      L N+R Y I  E+
Sbjct: 58  KNGNQRCFEGSIYVKELCGLRNGTKVFKFIELANIRLYSIDEED 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,390,859
Number of Sequences: 27780
Number of extensions: 156256
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)