Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247...    29   3.0  
04_04_1335 - 32730516-32730570,32730655-32731154,32731235-327314...    28   4.0  

>04_04_1334 -
           32723950-32724121,32724527-32724558,32724665-32724708,
           32724962-32725123,32725984-32726422
          Length = 282

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 208 LAINIASGAGFY*FKLNSLELQKHFRCNNIC 116
           L ++I  G  FY   + + ELQ++ R NNIC
Sbjct: 165 LFVDIVLGYMFYKLSILAAELQRNGRANNIC 195


>04_04_1335 -
           32730516-32730570,32730655-32731154,32731235-32731416,
           32732673-32732779,32733364-32733395,32733499-32733542,
           32733816-32733977,32734356-32734755
          Length = 493

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 208 LAINIASGAGFY*FKLNSLELQKHFRCNNIC 116
           L ++I  G  FY   + S ELQ++ + NNIC
Sbjct: 152 LFVDIVLGYIFYKLSILSAELQRNGKANNIC 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,990,735
Number of Sequences: 37544
Number of extensions: 203634
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)