Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)          29   3.1  
SB_51052| Best HMM Match : Ank (HMM E-Value=0)                         27   9.4  

>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
          Length = 278

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 88  YRNYF-TSSKYKYYYNGSAFVIPNYST*INRSQR 186
           YR+Y  TS+ Y+YYY G   V   YS   +R QR
Sbjct: 77  YRHYLSTSALYEYYYKGRKNVFGRYS---DRKQR 107


>SB_51052| Best HMM Match : Ank (HMM E-Value=0)
          Length = 804

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 168 NQ*KPAPLAIFIANDNIVCSPQLLS 242
           NQ K  PLA+ +  D+I C+  LLS
Sbjct: 439 NQWKTTPLAVAVMKDHIHCAEYLLS 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,281
Number of Sequences: 59808
Number of extensions: 266247
Number of successful extensions: 474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)