Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z82084-1|CAB04978.1|  398|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical
           protein C08F1.5b protein.
          Length = 905

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 453 W*ILIACNFHSTSFNRNTFFRRTHSIRSDPCTLIHSSEFSRFVT 322
           W I++ C F+  S N     RR  S +SD  T+ H +     +T
Sbjct: 420 WEIIVNCVFNLVSANGRNLMRRVESAKSD--TVFHRNNEKEGIT 461


>AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical
           protein C08F1.5a protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 453 W*ILIACNFHSTSFNRNTFFRRTHSIRSDPCTLIHSSEFSRFVT 322
           W I++ C F+  S N     RR  S +SD  T+ H +     +T
Sbjct: 343 WEIIVNCVFNLVSANGRNLMRRVESAKSD--TVFHRNNEKEGIT 384


>Z82084-1|CAB04978.1|  398|Caenorhabditis elegans Hypothetical
           protein ZK1053.1 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 39  ESTY*MIHFVITIKEQLQKLFYFFKVQILLQRKCFCNSK 155
           +S Y  + FV+   E +  +F   KV    +RKCFC SK
Sbjct: 46  QSRYGALRFVLVSLESI--IFLNQKVPDFERRKCFCKSK 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,142,631
Number of Sequences: 27780
Number of extensions: 206070
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)