Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52390.1 68418.m06500 photoassimilate-responsive protein, put...    28   3.3  
At3g10420.2 68416.m01250 sporulation protein-related similar to ...    27   7.7  
At3g10420.1 68416.m01249 sporulation protein-related similar to ...    27   7.7  
At3g05390.1 68416.m00589 expressed protein ; expression supporte...    27   7.7  

>At5g52390.1 68418.m06500 photoassimilate-responsive protein,
           putative similar to PIR|S62698
           photoassimilate-responsive protein precursor (clone
           PAR-1a) - common tobacco
          Length = 195

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 320 QVTNLLNSDECINVHGSDR 376
           +VTN++ SDECI   G DR
Sbjct: 72  KVTNIIESDECIKACGLDR 90


>At3g10420.2 68416.m01250 sporulation protein-related similar to
           hypothetical proteins: GB:P51281 [Chloroplast Porphyra
           purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
           [Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
           caldarium]; similar to stage III sporulation protein AA
           (GI:18145497) [Clostridium perfringens str. 13]; similar
           to stage III sporulation protein AA (mutants block
           sporulation after engulfment) (GI:22777578)
           [Oceanobacillus iheyensis]
          Length = 684

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +1

Query: 274 WQFQYKLTTASVDWFSSHEPAEFR*VYQCTRIGSN*VSPPKKSISVERS*MKITCDKNSP 453
           WQ   +L +A+   FSS   + FR      +  ++  SP      V R     + D  SP
Sbjct: 17  WQASRRLISATATAFSSDSSSSFRRTRGARQRIASSKSPASSPSPVRRPSDGFSFDVRSP 76

Query: 454 SSCSEVXIR 480
           SS S +  R
Sbjct: 77  SSDSSISSR 85


>At3g10420.1 68416.m01249 sporulation protein-related similar to
           hypothetical proteins: GB:P51281 [Chloroplast Porphyra
           purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
           [Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
           caldarium]; similar to stage III sporulation protein AA
           (GI:18145497) [Clostridium perfringens str. 13]; similar
           to stage III sporulation protein AA (mutants block
           sporulation after engulfment) (GI:22777578)
           [Oceanobacillus iheyensis]
          Length = 547

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +1

Query: 274 WQFQYKLTTASVDWFSSHEPAEFR*VYQCTRIGSN*VSPPKKSISVERS*MKITCDKNSP 453
           WQ   +L +A+   FSS   + FR      +  ++  SP      V R     + D  SP
Sbjct: 17  WQASRRLISATATAFSSDSSSSFRRTRGARQRIASSKSPASSPSPVRRPSDGFSFDVRSP 76

Query: 454 SSCSEVXIR 480
           SS S +  R
Sbjct: 77  SSDSSISSR 85


>At3g05390.1 68416.m00589 expressed protein ; expression supported
           by MPSS
          Length = 463

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 229 GEQTILSLAINIASGAGFY*FKLNSLELQKHFRCNNICTLKK*NS 95
           G Q IL L +   S +  Y F      LQ    CNNI T+K+ +S
Sbjct: 17  GLQVILGLLVITVSLSCLYRFHSVGYFLQNEDTCNNIYTIKEVSS 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,092,698
Number of Sequences: 28952
Number of extensions: 178158
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)