Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D06f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 425 PHPRLQRSPCRLLRNPSRGQPGP 493
           PHP L   P  L  +P+   PGP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 425 PHPRLQRSPCRLLRNPSRGQPGP 493
           PHP L   P  L  +P+   PGP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 508 SPKPVRTWLPSRRITKKSAWTPLKA 434
           S K V+ W  +RR+  K    P  A
Sbjct: 157 SEKQVKIWFQNRRVKYKKEDLPAAA 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,852
Number of Sequences: 336
Number of extensions: 1867
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)