Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    53   2e-08
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    53   2e-08
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    50   3e-07
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    50   3e-07

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = -1

Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
           EEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 418 EEGEFSEAREDLAALERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = -1

Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
           EEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 414 EEGEFSEAREDLAALERDYEEVGQDS 439


>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +2

Query: 212 GKVHGSLARAGKVKGQTPKVEKKKK 286
           GKVHGSLARAGKVK QTPKVEK++K
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEK 26


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +2

Query: 212 GKVHGSLARAGKVKGQTPKVEKKKK 286
           GKVHGSLARAGKVK QTPKVEK++K
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEK 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,825
Number of Sequences: 5004
Number of extensions: 28764
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)