Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    52   2e-07
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    51   6e-07
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918...    51   6e-07
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    51   6e-07
06_01_0507 + 3655570-3655573,3655648-3655832                           50   1e-06
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    34   0.060
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    30   1.3  
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725...    28   5.2  

>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = -1

Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
           EEGEFSEAREDLAALEKDYEEVG +S
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGAES 439


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = -1

Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
           EEGEFSEAREDLAALEKDYEEVG +
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGSE 438


>07_03_0994 +
           23190344-23190456,23191367-23191581,23191663-23191862,
           23192420-23192928,23193048-23193363
          Length = 450

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = -1

Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
           EEGEFSEAREDLAALEKDYEEVG +
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGAE 438


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = -1

Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
           EEGEFSEAREDLAALEKDYEEVG +
Sbjct: 495 EEGEFSEAREDLAALEKDYEEVGAE 519


>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = +2

Query: 212 GKVHGSLARAGKVKGQTPKVEKKKKK 289
           GKVHGSLARAGKV+GQTPKV K+ KK
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKK 27


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 19  RAIDTRPGRQWPGVHWSDQGTHSYSCCSWR*RPYSIIMWS 138
           +A+  RP    PG+HW++Q    YS CS    P  I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


>02_02_0664 -
          12747888-12747900,12748161-12748229,12748332-12748395,
          12749540-12749558,12749777-12749843,12749934-12749953,
          12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 43 RQWPGVHWSDQGTHSY 90
          R WPG+HWSD  T  Y
Sbjct: 51 RIWPGLHWSDSSTPLY 66


>03_06_0709 -
           35670153-35670350,35671206-35671259,35672444-35672527,
           35672688-35672902,35673959-35674058,35674178-35674276
          Length = 249

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 435 AFSGVHADFFVILLEGSQVLTG 500
           +F G  ADFF +LL G+ VLTG
Sbjct: 88  SFRGRTADFFYMLLFGATVLTG 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,918
Number of Sequences: 37544
Number of extensions: 220666
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)