Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D06f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 55 4e-08
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 55 4e-08
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 55 4e-08
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 55 4e-08
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 55 4e-08
SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0) 55 4e-08
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 55 4e-08
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 55 4e-08
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 7e-08
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32) 46 1e-05
SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0) 46 1e-05
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35) 27 7.1
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 27 9.4
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 28 EEGEFSEAREDLAALEKDYEEVGVDS 53
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 398 EEGEFSEAREDLAALEKDYEEVGVDS 423
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 112 EEGEFSEAREDLAALEKDYEEVGVDS 137
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 351 EEGEFSEAREDLAALEKDYEEVGVDS 376
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 1194 EEGEFSEAREDLAALEKDYEEVGVDS 1219
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEE 459
EEGEFSEAREDLAALEKDYEE
Sbjct: 785 EEGEFSEAREDLAALEKDYEE 805
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGVDS 439
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 379 EEGEFSEAREDLAALEKDYEEVGVDS 404
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 847 EEGEFSEAREDLAALEKDYEEVGVDS 872
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEE 459
EEGEFSEAREDLAALEKDYEE
Sbjct: 414 EEGEFSEAREDLAALEKDYEE 434
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 999 EEGEFSEAREDLAALEKDYEEVGVDS 1024
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 339 EEGEFSEAREDLAALEKDYEEVGVDS 364
>SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 250
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 212 EEGEFSEAREDLAALEKDYEEVGVDS 237
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 327 EEGEFSEAREDLAALEKDYEEVGVDS 352
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGVDS 439
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 54.0 bits (124), Expect = 7e-08
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 566 EEGEFSEAREDLAALEKDYEEVGADS 591
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEV ++S
Sbjct: 830 EEGEFSEAREDLAALEKDYEEVAVES 855
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEE 459
EEGEFSEAREDLAALEKDYEE
Sbjct: 399 EEGEFSEAREDLAALEKDYEE 419
>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
Length = 61
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/28 (85%), Positives = 24/28 (85%), Gaps = 3/28 (10%)
Frame = +2
Query: 215 KVHGSLARAGKVKGQTPKV---EKKKKK 289
KVHGSLARAGKVK QTPKV EKKKKK
Sbjct: 2 KVHGSLARAGKVKSQTPKVDAQEKKKKK 29
>SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 232
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEE 459
EEGEFSEAREDLAALEKDYEE
Sbjct: 212 EEGEFSEAREDLAALEKDYEE 232
>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 995
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 392 KIFHWLSTLRLPHP-RLQRSPCRLLRNPSRGQPGPH 496
K+FH + L P RL+R +++R + G P PH
Sbjct: 154 KLFHAVVVLEFPKSQRLERGQSQVIRCSAEGYPTPH 189
>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1671
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -2
Query: 514 ESSPKPVRTWLPSRRITKKSAWTPLKARVREPKSTKPMK 398
+ SPKP + WL +++ KK+ P K +V++ K KP++
Sbjct: 1630 KDSPKPQKVWLKNKKKGKKA--KPNKQQVKK-KPAKPVQ 1665
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 430 VREPKSTKPMKYLLWRTRTVLHSG 359
V E KP+KY ++ +TV++SG
Sbjct: 570 VAEDDGAKPLKYTFYQDKTVVYSG 593
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 144 KGAPHNDRVRSSSPTAARVRMRS 76
+G+PH R R+SSP AR R S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,891
Number of Sequences: 59808
Number of extensions: 243949
Number of successful extensions: 693
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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