Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 55 4e-08
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 55 4e-08
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 55 4e-08
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 55 4e-08
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 54 6e-08
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 54 6e-08
U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal prote... 54 6e-08
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 54 6e-08
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 53 1e-07
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 53 1e-07
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 53 1e-07
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 53 1e-07
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 53 1e-07
AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical ... 53 1e-07
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 51 6e-07
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 51 6e-07
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U97008-14|AAB52302.2| 298|Caenorhabditis elegans Serpentine rec... 29 2.7
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 6.2
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 27 6.2
Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGVDS 439
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 413 EEGEFSEAREDLAALEKDYEEVGVDS 438
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGVDS 439
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGVDS 439
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 54.0 bits (124), Expect = 6e-08
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 409 EEGEFSEAREDLAALEKDYEEVGADS 434
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 54.0 bits (124), Expect = 6e-08
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEARED+AALEKDYEEVG+DS
Sbjct: 414 EEGEFSEAREDMAALEKDYEEVGVDS 439
>U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 30 protein.
Length = 130
Score = 54.0 bits (124), Expect = 6e-08
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = +2
Query: 203 LLGGKVHGSLARAGKVKGQTPKVEKKKKK 289
LLGGKVHGSLARAGKV+ QTPKV+K+ KK
Sbjct: 68 LLGGKVHGSLARAGKVRAQTPKVDKQDKK 96
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 54.0 bits (124), Expect = 6e-08
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEFSEAREDLAALEKDYEEVG+D+
Sbjct: 419 EEGEFSEAREDLAALEKDYEEVGLDA 444
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEF+EAREDLAALEKDYEEVG DS
Sbjct: 412 EEGEFTEAREDLAALEKDYEEVGADS 437
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEF+EAREDLAALEKDYEEVG DS
Sbjct: 412 EEGEFTEAREDLAALEKDYEEVGADS 437
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEF+EAREDLAALEKDYEEVG DS
Sbjct: 412 EEGEFTEAREDLAALEKDYEEVGADS 437
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEF+EAREDLAALEKDYEEVG DS
Sbjct: 412 EEGEFTEAREDLAALEKDYEEVGADS 437
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEF+EAREDLAALEKDYEEVG DS
Sbjct: 412 EEGEFTEAREDLAALEKDYEEVGADS 437
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEF+EAREDLAALEKDYEEVG DS
Sbjct: 412 EEGEFTEAREDLAALEKDYEEVGADS 437
>AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical
protein Y19D2B.1 protein.
Length = 85
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEF+EAREDLAALEKDYEEVG DS
Sbjct: 49 EEGEFTEAREDLAALEKDYEEVGADS 74
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 50.8 bits (116), Expect = 6e-07
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
EEGEFSEARED+AALEKDYEE+G D
Sbjct: 420 EEGEFSEAREDMAALEKDYEEIGED 444
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 50.8 bits (116), Expect = 6e-07
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
EEGEFSEARED+AALEKDYEE+G D
Sbjct: 392 EEGEFSEAREDMAALEKDYEEIGED 416
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMDS 444
EEGEF EAR+DLAALEKDY EV D+
Sbjct: 417 EEGEFMEARDDLAALEKDYAEVSRDT 442
>U97008-14|AAB52302.2| 298|Caenorhabditis elegans Serpentine
receptor, class x protein56 protein.
Length = 298
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 396 YFIGLVLFGSLTLAFSGVHADFFVILLEGSQVLTGF 503
YF +VLF T+ H FF++ L +LT F
Sbjct: 60 YFCPMVLFDQSTMKQYSHHCGFFILFLSEFSILTHF 95
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 517 RESSPKPVRTWLPSRR---ITKKSAWTPLKARVREPKSTKP 404
R+ SPK V P ++ + KK P ++ +EP+ +KP
Sbjct: 573 RDPSPKKVAPTAPEKKTPVLAKKEPAGPADSKTKEPEKSKP 613
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 291 NFFFFFSTLGVCPLTLPARAKDPCTLP-PSN 202
NF F LGV L L A A DP LP PS+
Sbjct: 29 NFRMFRKALGVLVLVLVAHAVDPSDLPDPSS 59
>Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical
protein H12I19.2 protein.
Length = 324
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 436 ARVREPKSTKPMKYLLWRTRTV 371
A V K +KP KY+LW+T V
Sbjct: 219 AIVLSAKQSKPQKYILWQTMIV 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,289,482
Number of Sequences: 27780
Number of extensions: 173418
Number of successful extensions: 492
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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