Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.5  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.8  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 419 RLPHPRLQRSP 451
           R PHPRL+R P
Sbjct: 110 RPPHPRLRREP 120



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 419 RLPHPRLQRSP 451
           R PHPRL+R P
Sbjct: 136 RPPHPRLRREP 146


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 404 WLSTLRLPHPRLQR 445
           ++S  R PHPRL+R
Sbjct: 104 YISQPRPPHPRLRR 117



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 404 WLSTLRLPHPRLQR 445
           ++S  R PHPRL+R
Sbjct: 160 YISQPRPPHPRLRR 173


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 7   VAYQRAIDTRPGRQWPG 57
           VA        PGR WPG
Sbjct: 906 VARSNVTPRSPGRAWPG 922


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,676
Number of Sequences: 438
Number of extensions: 2231
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)