Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 51 5e-07
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 51 5e-07
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 51 5e-07
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 51 5e-07
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 51 5e-07
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 50 7e-07
At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 50 1e-06
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO... 50 1e-06
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A) 50 1e-06
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 27 5.8
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
EEGEFSEAREDLAALEKDYEEVG +
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGAE 438
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
EEGEFSEAREDLAALEKDYEEVG +
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGAE 438
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
EEGEFSEAREDLAALEKDYEEVG +
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGAE 438
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
EEGEFSEAREDLAALEKDYEEVG +
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGAE 438
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVGMD 447
EEGEFSEAREDLAALEKDYEEVG +
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVGAE 438
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 50.4 bits (115), Expect = 7e-07
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -1
Query: 521 EEGEFSEAREDLAALEKDYEEVG 453
EEGEFSEAREDLAALEKDYEEVG
Sbjct: 414 EEGEFSEAREDLAALEKDYEEVG 436
>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)
Length = 62
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +2
Query: 212 GKVHGSLARAGKVKGQTPKVEKKKKK 289
GKVHGSLARAGKV+GQTPKV K+ KK
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKK 27
>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
RIBOSOMAL PROTEIN S30 - Arabidopsis
thaliana,PID:e1358183
Length = 62
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +2
Query: 212 GKVHGSLARAGKVKGQTPKVEKKKKK 289
GKVHGSLARAGKV+GQTPKV K+ KK
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKK 27
>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
Length = 62
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +2
Query: 212 GKVHGSLARAGKVKGQTPKVEKKKKK 289
GKVHGSLARAGKV+GQTPKV K+ KK
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKK 27
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 11 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGD 109
H+R QS N S +K+R TL A+G+
Sbjct: 1385 HLRSQSKQTCATNAVASPSPLKKRTSTLTAIGE 1417
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,815,961
Number of Sequences: 28952
Number of extensions: 163035
Number of successful extensions: 491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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