Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)                     27   7.1  
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)               27   9.4  
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)                  27   9.4  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)                  27   9.4  

>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 266 DRTTLSVTCALRRLELFAENNLTQEK 189
           D  T + TC + RLELF + N+ ++K
Sbjct: 14  DEATETFTCYVERLELFFDANINEDK 39


>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
          Length = 1656

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 9    SNRKVILNY*LNNAKKTPQRSVSVSLPMSNLNETT 113
            +++ V+L + LN ++  P +     +P+S++NETT
Sbjct: 1288 NDKTVMLPWALNGSRPEPPKLAINEIPVSDINETT 1322


>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 266 DRTTLSVTCALRRLELFAE-NNLTQEK 189
           D  T + TC + RLELF + NN+ ++K
Sbjct: 14  DEATETFTCYVERLELFFDANNINEDK 40


>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
          Length = 425

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 266 DRTTLSVTCALRRLELFAE-NNLTQEK 189
           D  T + TC + RLELF + NN+ ++K
Sbjct: 14  DEATETFTCYVERLELFFDANNINEDK 40


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 266 DRTTLSVTCALRRLELFAE-NNLTQEK 189
           D  T + TC + RLELF + NN+ ++K
Sbjct: 14  DEATETFTCYVERLELFFDANNINEDK 40


>SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)
          Length = 419

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 266 DRTTLSVTCALRRLELFAE-NNLTQEK 189
           D  T + TC + RLELF + NN+ ++K
Sbjct: 14  DEATETFTCYVERLELFFDANNMNEDK 40


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 266 DRTTLSVTCALRRLELFAE-NNLTQEK 189
           D  T + TC + RLELF + NN+ ++K
Sbjct: 259 DEATETFTCYVERLELFFDANNINEDK 285


>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
          Length = 1086

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 266 DRTTLSVTCALRRLELFAE-NNLTQEK 189
           D  T + TC + RLELF + NN+ ++K
Sbjct: 14  DEATETFTCYVERLELFFDANNINEDK 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,972,401
Number of Sequences: 59808
Number of extensions: 217018
Number of successful extensions: 382
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)