Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D04f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   1.6  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   8.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.7  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 324 KLAFVIRIRGINQVSPKVRKVLQL 395
           KL FV+R+ GI  +   +RK ++L
Sbjct: 359 KLWFVLRLYGIENLQAFIRKHVEL 382


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 277 PDKHAIVATTTFPGKP 324
           P KH +   T  PG+P
Sbjct: 267 PSKHGLNDATAAPGEP 282


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 186 SAIKKKREIFKRAEQYVKEYRIKERD 263
           S+  ++RE  + A  ++K+Y     D
Sbjct: 269 SSANRRREFIRSAITFIKQYNFDGMD 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,876
Number of Sequences: 336
Number of extensions: 2232
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)