Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   157   7e-40
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   151   5e-38
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   144   9e-36
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.42 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   1.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.0  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   6.8  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   9.0  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   9.0  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  157 bits (382), Expect = 7e-40
 Identities = 77/146 (52%), Positives = 98/146 (67%)
 Frame = +3

Query: 84  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 263
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 264 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 443
           +I L R+AR  GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129

Query: 444 ATVNMLRIAEPYIAWGYPNLKSVREL 521
           AT  ML++ EPY+ +G PNLK+VREL
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVREL 155


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  151 bits (367), Expect = 5e-38
 Identities = 72/139 (51%), Positives = 94/139 (67%)
 Frame = +3

Query: 105 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 284
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 285 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 464
           AR  GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA   ML+
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135

Query: 465 IAEPYIAWGYPNLKSVREL 521
           + EPY+ +G PN K+VREL
Sbjct: 136 VVEPYVTYGIPNHKTVREL 154


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  144 bits (348), Expect = 9e-36
 Identities = 68/139 (48%), Positives = 92/139 (66%)
 Frame = +3

Query: 105 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 284
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR +ER+ IRL R 
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74

Query: 285 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 464
           A+N+G+ +VP E KL FVIRI G+  + PK+RKVL+L RL +INN VFVR NKA   MLR
Sbjct: 75  AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134

Query: 465 IAEPYIAWGYPNLKSVREL 521
           I EPY+ +G PNL SVREL
Sbjct: 135 IVEPYVMYGIPNLHSVREL 153


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 186 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 302
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 285  ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 404
            + N+G YY  G   +AFV  I G+ + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 219 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 320
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
 Frame = +3

Query: 81  DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRS--SAIKKKREIFKRAEQYVKEYRIK 254
           D  ++PA+PE  +K             Q   KR +  S ++ K  +  ++   V+EY   
Sbjct: 441 DENRIPALPE--VKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKSNLEAKSND-VEEYDAF 497

Query: 255 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFR 401
            +DEI     + N  N     E  + + +    + Q+S +  K   LF+
Sbjct: 498 YKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQQISNQQLKFASLFK 546


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 274 SLISSRSLMRYSLTYCSALLKISLFFLM 191
           SLI+ RS     + YC A L   LF+L+
Sbjct: 203 SLINRRSKQDKIIFYCGAFLVFVLFYLI 230


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 217 LKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPL 68
           LK +   L +E  + + + NL+V+    +L      + T G FL SS P+
Sbjct: 239 LKKAFTKLFSEPTMVNKSINLIVQARQQILSTAYLTALTRGDFLSSSRPI 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,921
Number of Sequences: 5004
Number of extensions: 36758
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)