Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   161   2e-40
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   156   9e-39
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    89   2e-18
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    30   1.3  
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885...    28   4.0  
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    27   6.9  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  161 bits (392), Expect = 2e-40
 Identities = 77/144 (53%), Positives = 102/144 (70%)
 Frame = +3

Query: 90  KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 269
           K   VPESVLK             +  L  +  A++ ++ IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 270 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 449
           +L R+AR +G +YV  EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67  QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126

Query: 450 VNMLRIAEPYIAWGYPNLKSVREL 521
           +NMLR  EPY+A+GYPNLKSVREL
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVREL 150


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  156 bits (379), Expect = 9e-39
 Identities = 73/140 (52%), Positives = 100/140 (71%)
 Frame = +3

Query: 102 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 281
           VPESVL+             +  +  +  +I+ ++ IF RA+QY +EY  +E++ ++L R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 282 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 461
           +AR +G +YV  E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70  EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129

Query: 462 RIAEPYIAWGYPNLKSVREL 521
           R  EPY+A+GYPNLKSVREL
Sbjct: 130 RRVEPYVAYGYPNLKSVREL 149


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
 Frame = +3

Query: 75  KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 254
           +E +++LP V E+VLK             +    +R       +   KR E +V+E+R K
Sbjct: 3   EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62

Query: 255 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 425
           E D +R+  + + R     P E   +KL F IRI G   + P +R++L+  RL Q+  GV
Sbjct: 63  ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120

Query: 426 FVRLNKATVNMLRIAEPYIAWGYPNLKSVREL 521
           F++   AT+  L + EP+I +G+PNLK+V++L
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDL 152


>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 168 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 308
           TL+ R+  IK KRE+F  KR E  ++E  ++ +  E+ +   A NR   +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198


>12_02_0398 -
           18586985-18587480,18587669-18587687,18588317-18588544,
           18589699-18589966
          Length = 336

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 313 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 411
           PG+ NW   S  +V TK  R+S +  N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132


>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 292 IVATTTFPGKPNWHLSSESVVSTKFH 369
           +V    +P   NWHLSS S +  K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,876
Number of Sequences: 37544
Number of extensions: 238089
Number of successful extensions: 534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)