Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      192   1e-49
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                30   1.0  
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   5.4  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                27   7.1  
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)                     27   9.4  
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)                     27   9.4  
SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)                   27   9.4  
SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61)                27   9.4  
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   27   9.4  
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)               27   9.4  
SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)                   27   9.4  
SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021)               27   9.4  
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)                      27   9.4  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  192 bits (469), Expect = 1e-49
 Identities = 94/148 (63%), Positives = 113/148 (76%)
 Frame = +3

Query: 78  EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 257
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 258 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRL 437
            DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 438 NKATVNMLRIAEPYIAWGYPNLKSVREL 521
           NKAT NMLRI +PYIA+GYPNLKSVREL
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVREL 150


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 277 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 381
           P +HA    T  P + N H +S S  +T   RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352


>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 433 RTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMTNANLASPGT**LPRLRACLASLISSRS 254
           RT  PLF    L  C   R    TW  P + +  + L       +      +A L+ +RS
Sbjct: 295 RTRAPLFYSFLLTGCTARRRENVTW-FPSMALAGSILLKQRCSDMNTTACIMAVLVKTRS 353

Query: 253 LMRYSLTY--CSALLKIS 206
           + ++ L +  CS+ ++IS
Sbjct: 354 MEQFLLLFIVCSSEIQIS 371


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 180 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 305
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 180 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 305
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 252 KERDEIRLARQARNRGNYYVP 314
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 270  RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRK 383
            RL R  + R NYY+  +  +AF + I  + +  P  R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923


>SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 490 PQAM*GSAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFG 368
           P+ +  + +  +++V+L  R N  LF  RSL SC   RT+G
Sbjct: 428 PRVLCATLLPVVYSVSLDSRYNE-LFTGRSLQSCGNQRTWG 467


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +3

Query: 63  PVKGKEDSKKLP--AVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYV 236
           P K KE SK +   AV +S+LK             + T  ++  AI KKR  +    +Y+
Sbjct: 305 PAK-KESSKHIEKNAVKKSILKAPKRNAKKAATDAEQTTTKK--AIDKKRRRYNSRRRYI 361

Query: 237 KEYRIKERDEIRLARQARNR 296
           +  R   R      R  R R
Sbjct: 362 RRRRFTSRRRATRRRYTRRR 381


>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 622

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 416 QWCVCTSE*GYCEYATYRRALHC 484
           +WC  T E  Y    TY RA+ C
Sbjct: 370 EWCKATMEASYTMNITYHRAIKC 392


>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 416 QWCVCTSE*GYCEYATYRRALHC 484
           +WC  T E  Y    TY RA+ C
Sbjct: 841 EWCKATMEASYTMNITYHRAIKC 863


>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 324

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 416 QWCVCTSE*GYCEYATYRRALHC 484
           +WC  T E  Y    TY RA+ C
Sbjct: 289 EWCKATMEASYTMNITYHRAIKC 311


>SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)
          Length = 324

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 416 QWCVCTSE*GYCEYATYRRALHC 484
           +WC  T E  Y    TY RA+ C
Sbjct: 289 EWCKATMEASYTMNITYHRAIKC 311


>SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61)
          Length = 219

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 416 QWCVCTSE*GYCEYATYRRALHC 484
           +WC  T E  Y    TY RA+ C
Sbjct: 64  EWCKATMEASYTMNITYHRAIKC 86


>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 274 SLISSRSLMRYSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDS 107
           SL  SR+ M     Y    LK++L  L+ ++ L S  C+L   R   ++  +S D+
Sbjct: 142 SLAISRNQMELFGLYAGMRLKVALVGLIYKKILNSSRCSLSTVRTGHVINLISNDA 197


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 416  QWCVCTSE*GYCEYATYRRALHC 484
            +WC  T E  Y    TY RA+ C
Sbjct: 1011 EWCKATMEASYTMNITYHRAIKC 1033


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 416 QWCVCTSE*GYCEYATYRRALHC 484
           +WC  T E  Y    TY RA+ C
Sbjct: 470 EWCKATMEASYTMNITYHRAIKC 492


>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
          Length = 310

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 330 PIWLPRERSSCHDCVLVWLV*FHHVP 253
           P+  P E S C  CVL WL  ++  P
Sbjct: 28  PLMAPCEHSYCSACVLGWLTHYNTCP 53


>SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)
          Length = 325

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 159 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRG 299
           L+  L+ R   I+K       AE+ +K  R+KE D I    +  +RG
Sbjct: 219 LRQALRERDRLIEKINSAVMSAEEQLKVRRLKEDDSIDQLSRHEHRG 265


>SB_3768| Best HMM Match : Involucrin (HMM E-Value=0.021)
          Length = 205

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 416 QWCVCTSE*GYCEYATYRRALHC 484
           +WC  T E  Y    TY RA+ C
Sbjct: 64  EWCKATMEASYTMNITYHRAIKC 86


>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 491

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 416 QWCVCTSE*GYCEYATYRRALHC 484
           +WC  T E  Y    TY RA+ C
Sbjct: 281 EWCKATMEASYTMNITYHRAIKC 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,292
Number of Sequences: 59808
Number of extensions: 287198
Number of successful extensions: 726
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)