Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 159 1e-39
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 159 1e-39
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 157 6e-39
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 157 6e-39
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 157 6e-39
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 153 9e-38
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 91 3e-19
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 1.1
At3g52860.1 68416.m05825 expressed protein 30 1.1
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 29 1.9
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 29 1.9
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 4.4
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 4.4
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 5.8
At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con... 27 7.7
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 27 7.7
At1g33970.1 68414.m04212 avirulence-responsive protein, putative... 27 7.7
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 7.7
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 159 bits (386), Expect = 1e-39
Identities = 76/140 (54%), Positives = 99/140 (70%)
Frame = +3
Query: 102 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 281
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 282 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 461
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 462 RIAEPYIAWGYPNLKSVREL 521
R EPY+ +GYPNLKSV+EL
Sbjct: 133 RRVEPYVTYGYPNLKSVKEL 152
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 159 bits (386), Expect = 1e-39
Identities = 76/140 (54%), Positives = 99/140 (70%)
Frame = +3
Query: 102 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 281
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 282 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 461
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 462 RIAEPYIAWGYPNLKSVREL 521
R EPY+ +GYPNLKSV+EL
Sbjct: 128 RRVEPYVTYGYPNLKSVKEL 147
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 157 bits (380), Expect = 6e-39
Identities = 76/147 (51%), Positives = 102/147 (69%)
Frame = +3
Query: 81 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 260
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 261 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 440
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 441 KATVNMLRIAEPYIAWGYPNLKSVREL 521
KAT+NMLR EPY+ +GYPNLKSV+EL
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKEL 149
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 157 bits (380), Expect = 6e-39
Identities = 76/147 (51%), Positives = 102/147 (69%)
Frame = +3
Query: 81 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 260
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 261 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 440
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 441 KATVNMLRIAEPYIAWGYPNLKSVREL 521
KAT+NMLR EPY+ +GYPNLKSV+EL
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKEL 149
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 157 bits (380), Expect = 6e-39
Identities = 76/147 (51%), Positives = 102/147 (69%)
Frame = +3
Query: 81 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 260
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 261 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 440
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 441 KATVNMLRIAEPYIAWGYPNLKSVREL 521
KAT+NMLR EPY+ +GYPNLKSV+EL
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKEL 149
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 153 bits (370), Expect = 9e-38
Identities = 75/140 (53%), Positives = 97/140 (69%)
Frame = +3
Query: 102 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 281
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 282 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 461
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 462 RIAEPYIAWGYPNLKSVREL 521
R EPY+ +G+PNLKSV+EL
Sbjct: 128 RRVEPYVTYGFPNLKSVKEL 147
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 91.5 bits (217), Expect = 3e-19
Identities = 49/149 (32%), Positives = 79/149 (53%)
Frame = +3
Query: 75 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 254
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 255 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVR 434
E D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 435 LNKATVNMLRIAEPYIAWGYPNLKSVREL 521
+ L +PY+ +GYPN KSV++L
Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKDL 151
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.9 bits (64), Expect = 1.1
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +1
Query: 100 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 270
+ + C +V G+ F++ +Y + G LL R G+ ++S RN A + K+
Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191
Query: 271 D*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKF 387
PD+ + + PG+P WH+ ++ H S KF
Sbjct: 192 AKPDEPSWESPWG-PGRPGWHIECSAM---SVHYLSPKF 226
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 159 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 269
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 280 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 402
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 341 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 380
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 280 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 402
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 554 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 593
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -2
Query: 472 SAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMT 335
S R FT++ F+R N+ + I+R+ C TL + ++W+ +I+ +
Sbjct: 1059 SVPRKWFTISPFKRKNSFIAIYRNF-LCTTLISHSKSWISFQIQFS 1103
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 308 RSRGSQIGICHPNPWYQPSFTEG 376
+ +G +IGI H W++P EG
Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 220 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 372
G + T R+ +R + SD K+ V+ T GK HLS E VS F R
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRR 454
>At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
thaliana]
Length = 533
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 299 QLLRSRGSQIGICHPNPWYQPSFTEGP*SSATV 397
Q + +G +IGI H W++P + S AT+
Sbjct: 268 QCEKCKGGKIGIAHSPAWFEPHDFKDEQSGATI 300
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 75 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 254
+ED +++ + +LK L+ L RRSS K E FK E+ ++E R++
Sbjct: 324 REDIRRVKNDWDLLLKRLEKEKTELQVQLETELDRRSSEWTSKVESFKVEEKRLRE-RVR 382
Query: 255 ERDEIRLARQ 284
E E ++ Q
Sbjct: 383 ELAEHNVSLQ 392
>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 342
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 174 KRRSSAIKKKREIFKRAEQYVKEYRIK 254
KR S IKK RE +RAE+ KE + K
Sbjct: 309 KRSSDEIKKLRENLERAEKETKELQKK 335
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 370 GETWLIPRIRMTNANLASPGT 308
G TW+ P I +N ++ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,087,825
Number of Sequences: 28952
Number of extensions: 195200
Number of successful extensions: 486
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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