Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    28   0.73 
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        28   0.97 
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    27   1.7  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   3.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   3.0  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   3.0  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   5.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   5.2  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   5.2  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  

>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 517 WVPGVSLGFSQNVFWSK*ISW 455
           W+PG  LG+S N F +K I+W
Sbjct: 301 WIPGTDLGYSDN-FVNKGINW 320


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = +2

Query: 158 TGFTKISETP-APNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAPEK--SL 328
           +G   +S  P    S+ P  ++    ESS     +  E+  + S S   NV A +    L
Sbjct: 304 SGTNVVSSQPNVVESHVPPSSNDTKQESSLIDLMKLTEEPAVPSPSLPTNVPANQSLSML 363

Query: 329 HSLDNTPKFTMAGKGNNPKIENIPAPNS 412
            SL N+   T  G  N+P       PN+
Sbjct: 364 SSLSNSMSSTSNGALNSPSYSQAAIPNT 391


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
 Frame = +2

Query: 95  YSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKA------DKVLHESSPSYTF 256
           Y P+ +M    GGPK +    +   KI E+  P+ Y+ + +      ++ +H S  S   
Sbjct: 191 YLPKSAMKQKKGGPKDSSKHPSNDGKIPES-KPSVYKSRASNLFSSNEQSIHSSFGSKFH 249

Query: 257 RTKEQIVLRSE-SPAPNVYAPEKSLHSLDNTPKFTMAGKGNN 379
             K       E SP+ N   P  S     N PKF  + K +N
Sbjct: 250 FDKSSNPFSFEFSPSSNAAKPSNSEEC--NIPKFNSSFKTSN 289


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 377 NPKIENIPAPNSYNPDKADKLLHE 448
           +P +++ P PN  NPD  +K  H+
Sbjct: 124 SPLLQSTPKPNINNPDNENKSKHD 147


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 44  RSKDVVDKVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKA 217
           R +D+V+   H P PNM+ P +  +       + I   T  T  + +PA  S   Q A
Sbjct: 27  RLEDLVES-GHKPLPNMHRPSRDSNSQTHNISFNIGTPTAPTVSTGSPAVASLHDQVA 83


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
 Frame = +2

Query: 89  NMYSPEKS-MHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHESSPSYTFRTK 265
           N   P  S M++   G +     K     +  T  P S +P   +   H  SPS  F+T 
Sbjct: 211 NQQCPNPSCMYLHEPGDEVDSYTKEDLASLQHT-RPLSTKPNVVNGATHSPSPSLPFKTP 269

Query: 266 EQIVLRS--ESPAPNVYAPEKSLHSLDNT-PKFTMA-GKGNNPKIENIPAPNS 412
              V ++  E    +  A  + + ++D+  P+ +M      N    ++PAP S
Sbjct: 270 LLPVTKTPLEEANSSPAAQNQHITTVDHVHPQVSMTPSLSTNNTATSVPAPYS 322


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 281 RSESPAPNVYAPEKSLHSLDNTPKFTMAGKGNNPKIENIPAPNS 412
           RS +P P   AP +S  +    P  TMA      +++  P P +
Sbjct: 5   RSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTA 48


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +2

Query: 314 PEKSLHSLDNTPKFTMAGKGNNPKIENIPAPNSYNPDKADKLLHESSPAYSF 469
           PE ++H   N      +   N+    +  +PNS NP       HES+    F
Sbjct: 370 PESNIHDSGNFHPIHSSVDNNSFSQRDFDSPNSINPPSPLMSNHESASTEHF 421


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 348 GVLSNECKDFSGA*TFGAGDSLRRTICSLVR 256
           G+LSN+C+D       GAG+ + R+ C +++
Sbjct: 27  GLLSNQCQDLLEFINLGAGNEVGRS-CHVIQ 56


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +2

Query: 173 ISETPA--PNSYEPQKADKVLHESSPSYTFRTKEQIV---LRSESPAPNVY 310
           +S  PA   NSY+ Q A+    E SP+YT R +         +  P P +Y
Sbjct: 449 VSGQPAMNENSYDLQNANLCAPEMSPTYTARHRSNSAGSRFDAYEPIPQLY 499


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +2

Query: 365 GKGNNPKIENIPAPNSYNPDKADKLLHESSPAYSFRPKNILG 490
           GK   P       P   +  K  +   ES+P +S RP    G
Sbjct: 440 GKEQPPNKAEPAVPTEASSTKPSEAAEESTPRFSVRPNKFTG 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,267
Number of Sequences: 5004
Number of extensions: 48450
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)