Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 38 0.006
05_01_0299 - 2322204-2322734,2324089-2326164 34 0.080
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 29 2.3
07_01_1152 - 10837540-10839549 29 3.0
04_01_0188 - 2208001-2208576,2211502-2211513,2212837-2212970,221... 29 3.0
07_01_0225 - 1650665-1652743 28 4.0
05_07_0052 + 27340499-27340597,27340708-27340801,27341206-273414... 28 4.0
04_04_0785 + 28048368-28048372,28049387-28049447,28050083-280501... 28 4.0
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376... 28 5.2
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 28 5.2
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50... 27 6.9
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 27 6.9
11_06_0248 + 21680237-21680392,21680450-21681141,21681397-216817... 27 9.1
10_07_0031 + 12051846-12052059,12052360-12052410,12053514-120535... 27 9.1
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891 27 9.1
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 27 9.1
>04_03_0904 + 20717005-20718087
Length = 360
Score = 37.5 bits (83), Expect = 0.006
Identities = 40/154 (25%), Positives = 54/154 (35%), Gaps = 4/154 (2%)
Frame = +2
Query: 29 PSFSMRSKDVVDKVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEP 208
P++ + K TP P Y P+ P Y K T + TP P SY+P
Sbjct: 124 PTYKPQPKPTPAPYTPTPTPPTYKPQPKP---TPPPTYKPQPKPTPTPYTPTPTPPSYKP 180
Query: 209 Q-KADKVLH---ESSPSYTFRTKEQIVLRSESPAPNVYAPEKSLHSLDNTPKFTMAGKGN 376
Q K + + PSY + K + +P P Y P+ N P
Sbjct: 181 QPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPK----PNPPPTYKPQPKP 236
Query: 377 NPKIENIPAPNSYNPDKADKLLHESSPAYSFRPK 478
NP PAP +Y P P Y +PK
Sbjct: 237 NPPPTYKPAPPTYKPQPKP----NPPPTYKPQPK 266
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 33.9 bits (74), Expect = 0.080
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 1/144 (0%)
Frame = +2
Query: 11 ILHQSAPSFSMRSKDVVD-KVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETP 187
+ + A ++ S VD +V P Y P L+ G T K++ P
Sbjct: 226 VANACAMDYNPASLPAVDTQVIAQPVVGNYEPNNPSSDLSVSITNPQTGVTFRGKLTPVP 285
Query: 188 APNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAPEKSLHSLDNTPKFTMAG 367
PNSY KAD ++ + +K + +++S PN+ E S D++ +
Sbjct: 286 -PNSYNTAKADSSATPANLNVP-SSKPSVSGKAQSEIPNLKPKENSNPVPDHSEEQPFVA 343
Query: 368 KGNNPKIENIPAPNSYNPDKADKL 439
P ++ P P+ K D L
Sbjct: 344 AATQPVKDDKPIPSKRGSSKRDSL 367
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 182 TPAPNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAPEKSLHSLD 340
T P+SY LHE PS+ +Q ++ E P + E LH ++
Sbjct: 638 TLPPSSYRLGVRPSKLHELFPSHITEVLQQSIIMIEEEMPGFVSSEALLHGVE 690
>07_01_1152 - 10837540-10839549
Length = 669
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 86 PNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHESS 241
P+ +S + H G K +LG GF K+ + S P +V HES+
Sbjct: 333 PHRFSFKDMYHATEGFNKNNLLGVGGFGKVYKGVLQKSKVPVAIKRVSHEST 384
>04_01_0188 -
2208001-2208576,2211502-2211513,2212837-2212970,
2213147-2213262,2214844-2215075,2218483-2218548,
2219661-2219750,2221340-2221388
Length = 424
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 168 VNPVFPKIVYLGPPFNICIDFSGEYMLGAGV-CSTLSTTSLDL 43
VNP PK+ + P +ICI SG +G + C L T +D+
Sbjct: 230 VNPKAPKLTFKKPIGSICI--SGHKFIGCPIPCGVLITRLMDI 270
>07_01_0225 - 1650665-1652743
Length = 692
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 86 PNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHES 238
P+ +S + H +G +LG GF K+ + P+S +V HES
Sbjct: 354 PHRFSYKDLFHATHGFDNKNLLGAGGFGKVYKGVLPSSKLEVAVKRVSHES 404
>05_07_0052 +
27340499-27340597,27340708-27340801,27341206-27341415,
27341727-27342439
Length = 371
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 306 TFGAGDSLRRTICSLVRNV*DGELS 232
T GAG +L ++ICS +NV D S
Sbjct: 101 TVGAGPTLHKSICSSAKNVVDSSFS 125
>04_04_0785 +
28048368-28048372,28049387-28049447,28050083-28050151,
28050249-28050303,28050386-28050433,28050534-28050629,
28050895-28051051,28051250-28051340,28051431-28051559,
28051650-28051803,28052147-28052241,28052316-28052498
Length = 380
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 98 SPEKSMHMLNGGPKYTILGKT 160
SP+ +MH L G KYT+ G T
Sbjct: 279 SPKSTMHFLPGSYKYTVRGST 299
>10_08_0497 -
18336819-18337140,18337226-18337360,18337579-18337673,
18337759-18337845,18337923-18338129,18338209-18338535,
18338711-18338803,18338861-18339175,18339283-18339792,
18339889-18339960,18341209-18341256,18341427-18341551,
18341640-18341661
Length = 785
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 17 HQSAPSFSMRSKDVVDKVEHTPAPNM 94
+ SAP FS+ S V+DKV H NM
Sbjct: 152 NNSAPKFSVMSGSVLDKVMHFVLKNM 177
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.9 bits (59), Expect = 5.2
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Frame = +2
Query: 176 SETPAPNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAPEKSLHSLDN-TPK 352
S P P S E K L ESSP + + E P+P K L P+
Sbjct: 1204 SPPPIPESIELSPHSKALPESSP-------DNQDIEPECPSPPQIPESKELSRQSKILPE 1256
Query: 353 FTMAGKGNNPKIENIP-APNSYNPDKADKLLHESSP 457
+ + P+ + P P S + K+L ESSP
Sbjct: 1257 SSPGNQDIEPECPSPPQIPESKELSQQSKILPESSP 1292
>07_01_0069 +
505291-505327,505726-505956,506317-506652,507025-507372,
507735-508594,508902-508971,509157-509371,509477-509537,
509606-509715,510644-510694,510794-510916
Length = 813
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 38 SMRSKDVVDKVEHTPAPNM-YSPEKS--MHMLNGGPKYTILGKTGFTKISETPAPNS 199
++R+ DVV H P P M +P KS + GG T+ G ++ E AP +
Sbjct: 258 ALRADDVVASSGHDPTPEMDRTPGKSKTLKQRRGGAISTLAVPEGDKEVDEQEAPGA 314
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.5 bits (58), Expect = 6.9
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Frame = +2
Query: 77 TPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHESSPSYTF 256
TP P ++ + ++ P Y+ S + P S + +SP Y+
Sbjct: 1600 TPGPGSFTSSSPYNPVS--PFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSP 1657
Query: 257 RTK-EQIVLRSESPAPNVYAPEKSLHSLDNTPKFTMAGKGN--NPKIENIPAPNSYNPDK 427
+ S SP VY+P +++ ++ + N +P P SY+P
Sbjct: 1658 SSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTS 1717
Query: 428 ADKLLHESSPAYS 466
+SP+YS
Sbjct: 1718 PSYSYSPTSPSYS 1730
>11_06_0248 +
21680237-21680392,21680450-21681141,21681397-21681724,
21681945-21682801,21682928-21683378,21683761-21684066,
21684136-21684456,21684539-21684745,21685568-21685810
Length = 1186
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 266 EQIVLRSESPAPNVYAPEKSLHSL 337
+Q++L SE+ P+ P KSLH+L
Sbjct: 568 QQLILPSETTLPHFTEPMKSLHTL 591
>10_07_0031 +
12051846-12052059,12052360-12052410,12053514-12053520,
12053621-12053804,12053920-12054001,12054174-12054243,
12054460-12054574
Length = 240
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -3
Query: 114 IDFSGEYMLGAGVCSTLST 58
+DF+GE+ + G+C+TL++
Sbjct: 84 VDFTGEFRMSFGLCNTLAS 102
>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
Length = 1274
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 41 MRSKDVVDKVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKAD 220
MR ++ + E P+ +S + H +G +LG GF K+ + P S
Sbjct: 316 MRYAELHEDWEAEFGPHRFSYKDLFHATDGFKNRNLLGLGGFGKVYKGVLPTSKLHVAVK 375
Query: 221 KVLHES 238
+V H+S
Sbjct: 376 RVSHDS 381
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 278 LRSESPAPNVYAPEKSLH-SLDNTPKFTMAGK 370
+R E P P+V A E+ LH S++ K + GK
Sbjct: 314 VRGEEPPPDVLAEERGLHASIEGDVKDLLEGK 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,640,646
Number of Sequences: 37544
Number of extensions: 294655
Number of successful extensions: 727
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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