Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_1984| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_6412| Best HMM Match : Extensin_2 (HMM E-Value=8.1) 32 0.25
SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033) 31 0.44
SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16) 31 0.76
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 31 0.76
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 29 2.3
SB_57521| Best HMM Match : rve (HMM E-Value=0.13) 29 2.3
SB_56923| Best HMM Match : PT (HMM E-Value=0.95) 29 3.1
SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16) 28 5.4
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_8961| Best HMM Match : NUDE_C (HMM E-Value=5.6) 27 7.1
SB_51043| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 27 9.4
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016) 27 9.4
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 54.8 bits (126), Expect = 4e-08
Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Frame = +2
Query: 32 SFSMRSKDVVDKVEHTPAPNMYSPEKSMHM-LNGGPKYTILGKTGFTKISETPAPNSYEP 208
SF R +D ++ +P P P +G P +++ + +S P P Y P
Sbjct: 171 SFGQRHRDFFTQI--SPGPKYMVPSGLTQCGKDGTPAFSLYSRAKEKNLSHVPGPGEYSP 228
Query: 209 QKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYA-PEKSLHSLDN---TPKFTMAGKGN 376
+K +PSY+F ++ + + +P+PN Y+ P + + N +++ G+ N
Sbjct: 229 EKHSIPHERKAPSYSFGSRTKYAQKQITPSPNSYSLPALTGPKVVNKTSAAAYSLTGRSN 288
Query: 377 N----PKIENIPAPNSYNPDKADKLLHESSPAYSFRPKNIL 487
N ++ P P +Y DK + AYS +N +
Sbjct: 289 NGGFSEDLQKTPGPGTYKVTSPDK-YRKRMAAYSMNGRNFM 328
Score = 51.2 bits (117), Expect = 5e-07
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Frame = +2
Query: 29 PSFSMRSKDVVDKVEHTPAPNMYSPEK-SMHMLNGGPKYTILGKTGFTKISETPAPNSYE 205
P+FS+ S+ + H P P YSPEK S+ P Y+ +T + + TP+PNSY
Sbjct: 204 PAFSLYSRAKEKNLSHVPGPGEYSPEKHSIPHERKAPSYSFGSRTKYAQKQITPSPNSYS 263
Query: 206 --PQKADKVLHE-SSPSYTFRTKEQIVLRSE----SPAPNVYAPEKSLHSLDNTPKFTMA 364
KV+++ S+ +Y+ + SE +P P Y ++M
Sbjct: 264 LPALTGPKVVNKTSAAAYSLTGRSNNGGFSEDLQKTPGPGTYKVTSPDKYRKRMAAYSMN 323
Query: 365 GKGNNP-KIENIPAPNSYNPDKADKLLHE-SSPAYSFRPKN 481
G+ P P P ++P+K ++H+ ++P SF K+
Sbjct: 324 GRNFMPGDSTQKPGPGQHSPEKV--VMHQKAAPKVSFGIKH 362
Score = 39.5 bits (88), Expect = 0.002
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Frame = +2
Query: 20 QSAPSFSMRSKDVVDKVEHTPAPNMYS-PE-KSMHMLN--GGPKYTILGKT---GFTK-I 175
+ APS+S S+ + + TP+PN YS P ++N Y++ G++ GF++ +
Sbjct: 237 RKAPSYSFGSRTKYAQKQITPSPNSYSLPALTGPKVVNKTSAAAYSLTGRSNNGGFSEDL 296
Query: 176 SETPAPNSYEPQKADKVLHESSPSYTFRTKEQIVLRS-ESPAPNVYAPEKSLHSLDNTPK 352
+TP P +Y+ DK + +Y+ + + S + P P ++PEK + PK
Sbjct: 297 QKTPGPGTYKVTSPDK-YRKRMAAYSMNGRNFMPGDSTQKPGPGQHSPEKVVMHQKAAPK 355
Query: 353 FTMAGK 370
+ K
Sbjct: 356 VSFGIK 361
>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +2
Query: 134 PKYTILGKTGFTKISETPAPNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYA 313
P ++ K G + P P P + + + +P+YT + Q+ +PAP Y
Sbjct: 360 PAWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTLHDRTQLNKAFSTPAPGTYK 419
Query: 314 PEKSLHSLDNTPKFTMAGKGNNPKIENI-PAPNSYNPDK 427
++ P ++M G+ + P P +++P+K
Sbjct: 420 VHNPDYNKKRMPAYSMNGRNYMTGDNTLKPGPGAHSPEK 458
Score = 36.7 bits (81), Expect = 0.012
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +2
Query: 194 NSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAPEKSLHS-LDNTPKFTMAGK 370
N ++P+K K P+++F K + ++ P P P + + D TP +T+ +
Sbjct: 350 NDHDPRKHKK------PAWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTLHDR 403
Query: 371 GNNPKIENIPAPNSY---NPDKADKLLHESSPAYSFRPKNIL 487
K + PAP +Y NPD K + PAYS +N +
Sbjct: 404 TQLNKAFSTPAPGTYKVHNPDYNKKRM----PAYSMNGRNYM 441
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 125 NGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHESSPSYTFRTKEQIV-LRSESPAP 301
+G P YT+ +T K TPAP +Y+ D + P+Y+ + + + P P
Sbjct: 393 DGTPAYTLHDRTQLNKAFSTPAPGTYKVHNPD-YNKKRMPAYSMNGRNYMTGDNTLKPGP 451
Query: 302 NVYAPEK 322
++PEK
Sbjct: 452 GAHSPEK 458
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 29 PSFSMRSKDVVDKVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISE-TPAPNSYE 205
P++++ + ++K TPAP Y + P Y++ G+ T + P P ++
Sbjct: 396 PAYTLHDRTQLNKAFSTPAPGTYKVHNPDYNKKRMPAYSMNGRNYMTGDNTLKPGPGAHS 455
Query: 206 PQK 214
P+K
Sbjct: 456 PEK 458
>SB_1984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 53 DVVDKVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTG-FT-KISETPAPNSYEPQK 214
D+ D V P P Y P+ H ++GG +T+ ++ FT K +TP P +Y QK
Sbjct: 9 DIQDSVVAAPGPGQYDPQLVQHHISGG--HTLANRSSRFTSKPVKTPGPGAYNLQK 62
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 33.5 bits (73), Expect = 0.11
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Frame = +2
Query: 167 TKISETPAPNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAP-EKSLHSLDN 343
+K PAP E + ++ P Y+ V R P P AP + SLH +
Sbjct: 655 SKAPMRPAPGKIELPDWPRTDEDTPPPYSDVAMVPPVTR-RPPPPRPMAPKDASLHRASS 713
Query: 344 TPKFTMAGKGNNPKIENIPAPNSYNPDKADKLLHESSPAYSFRP 475
P FT G PK PAP + P +L E P RP
Sbjct: 714 PPGFTHKGSEPPPK----PAPPA-RPGSVANVLGERKPLPGRRP 752
>SB_6412| Best HMM Match : Extensin_2 (HMM E-Value=8.1)
Length = 329
Score = 32.3 bits (70), Expect = 0.25
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Frame = +2
Query: 95 YSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHESS---PSYTFRTK 265
Y+P K + L +Y T F + P Y P K+ L + S P + TK
Sbjct: 136 YTPLKDLTYLTPPIEYPTKSYTSFENLPYFTPPIEY-PTKSYTSLKDLSYFTPPIKYPTK 194
Query: 266 EQIVLRSESPAPNVYAPEKSLHSLDNTPKFTM 361
L P P P KS SL + P FT+
Sbjct: 195 SYTPLGPHLPHPTDRYPTKSYTSLKDLPYFTL 226
>SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033)
Length = 359
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 290 SPAPNVYAPEKSLHSLDNTPKFTMAGKG 373
SP + Y P K+ HSLD T + MAG+G
Sbjct: 143 SPKTSCYRPIKTYHSLDVTSQRAMAGRG 170
>SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 31.5 bits (68), Expect = 0.44
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 11/142 (7%)
Frame = +2
Query: 80 PAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHESSPS-YTF 256
P P Y P + P YT+ KT P +S + A K +SP +T+
Sbjct: 45 PKPTTYDPPTKLPWETQAPAYTMRPKT-------QPEKDSGGDRVAWKKQWMASPDIWTY 97
Query: 257 RTKEQIVLRSESPAP----------NVYAPEKSLHSLDNTPKFTMAGKGNNPKIENIPAP 406
R + SPA ++ P+ HS+ F + KG + + P+P
Sbjct: 98 RVDFDNRVTWPSPADYQARPTLGNTHITLPQSPSHSMGRRQAFVIGRKGADKE----PSP 153
Query: 407 NSYNPDKADKLLHESSPAYSFR 472
N YN D A + P+Y+ +
Sbjct: 154 NQYNHDIAKAKVLRRFPSYTIQ 175
>SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16)
Length = 97
Score = 30.7 bits (66), Expect = 0.76
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +2
Query: 77 TPAPNMYSPEKSMHML--NGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHESSPSY 250
TPAP YSPEK +H P Y++ G+T + K+ PN Y ++ S+
Sbjct: 5 TPAPGAYSPEK-VHPQGERHAPAYSMGGRTRYRKL-----PNKYSSASYSMTGRATTGSF 58
Query: 251 TFRTKEQIVLRSESPAPNVYAPEKSLHSLDNTPKFTMAGKGNNP 382
+ E + +++P P Y + P+++M G+ P
Sbjct: 59 S----EDL---AKAPGPGKYNTTIPNTYKNRQPQYSMLGRSYMP 95
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +2
Query: 179 ETPAPNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAPEK-SLHSLDNTPKF 355
+TPAP +Y P+K +P+Y+ + + PN Y+ S+ T F
Sbjct: 4 KTPAPGAYSPEKVHPQGERHAPAYSMGGRTRY-----RKLPNKYSSASYSMTGRATTGSF 58
Query: 356 TM-AGKGNNPKIENIPAPNSY 415
+ K P N PN+Y
Sbjct: 59 SEDLAKAPGPGKYNTTIPNTY 79
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 314 PEKSLHSLDNTPKFTMAGKGNNPKIENIPAPNSYNPD-KADKLLHESSPAYSFRP 475
P++ H NTP T + +P+ +PA N+YNP + D P Y P
Sbjct: 745 PQQYQHPHANTPSPTPHQQYQHPQNAGLPADNTYNPSPQGDPNQGGQQPGYGAPP 799
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 161 GFTKISETPAPNSYEPQKADKVLHESS---PSYTFRTKEQIVLRSESPAPNVYAPEKS 325
G K ETP S + AD V+HESS P+ R+ + LRS + + P +S
Sbjct: 146 GDRKEKETPQEGSVKSTPADIVVHESSPKPPNTGIRSHNKSPLRSPKASRALLEPGRS 203
>SB_57521| Best HMM Match : rve (HMM E-Value=0.13)
Length = 1105
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = +2
Query: 17 HQSAPSFSMRSKDVVDKVEHTPAPN------MYSPEKSMHMLNGGPKYTILGKTGFTKIS 178
H S + D+ ++ ++ PAPN MY+ E +H ++ GK FT +
Sbjct: 137 HASPRPRDVHYTDICEEQQYGPAPNPDYGPDMYALEAQVHNIDTDSTSKSPGKRYFTTLP 196
Query: 179 ETPAPNSYEPQK 214
+ +SY P K
Sbjct: 197 LSTTGSSYRPVK 208
>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
Length = 441
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/85 (29%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Frame = +2
Query: 29 PSFSMRSKDVVD-KVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYE 205
PSF D K+ P P + K H N GP I G G T E P
Sbjct: 160 PSFFPDGSQPQDFKMPEPPLPKFFQGTKKGHSFNEGPHSMISG--GMTGPKEEP----LS 213
Query: 206 PQKADKVLHESSPSYTFRTKEQIVL 280
PQ + HE T T + L
Sbjct: 214 PQSSGSPFHEDGFRSTSCTSAPVTL 238
>SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16)
Length = 517
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +2
Query: 284 SESPAPNVYAPEKSLHSLDNTPKFTMAGKGNNPKI-----ENIPAPNSYNPDKADKLLHE 448
++SP P+ P+ + H+L++T + + + G NP++ ++ P P + PD + +
Sbjct: 428 ADSPQPS--DPDDTAHALNSTVEDSSSDLGQNPQVPDYVPDSSPDPGA-EPDSVPQSVQS 484
Query: 449 SSPA 460
+PA
Sbjct: 485 DTPA 488
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 173 ISETPAPNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESP 295
+ +T P++ P KA KVL ES PS + + L ESP
Sbjct: 1003 VFDTTLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESP 1043
>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +2
Query: 176 SETPAPNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAPEKSLHSLDNTPKF 355
S TP + PQKA ++ + R ++ V S P+P+ S+ +P+
Sbjct: 323 SVTPPSTTMVPQKASVATSPTTTVHFQRLEKPSVASSLMPSPDSTVMTSQDTSMKTSPEA 382
Query: 356 TMAGKGNNPKIENIPAPNSYN 418
T+ N+ + AP+S N
Sbjct: 383 TVVPSSNDIRARE-GAPSSAN 402
>SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 8 RILHQSAPSFSMRSKDVVDKVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETP 187
RIL + R+K + E PAP SP S ++ P T K+ T + P
Sbjct: 392 RILLADIYGYCQRNKSLAKDQESDPAPGASSPTTSQSSVS-EPTPTSKPKSSGTSLLSFP 450
Query: 188 APNS 199
+ NS
Sbjct: 451 STNS 454
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 20 QSAPSFSMRSKDVVDKVEHTPAPNMYSPEKSMHMLNGGP-KYTILGKTGFTKISETPAPN 196
+ AP+ S +SK V+ E P P++ S K +L+ P T+ K K S A
Sbjct: 754 KQAPAASPKSKSAVEAPELPPRPSVAS--KPTTLLSQNPTSTTVKSKPEVKKESSYDASC 811
Query: 197 SYEPQKADKVLHE 235
S Q +++ HE
Sbjct: 812 SDNEQSSEQGSHE 824
>SB_8961| Best HMM Match : NUDE_C (HMM E-Value=5.6)
Length = 298
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 8 RILHQSAPSFSMRSKDVVDKVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETP 187
RIL + R+K + E PAP SP S ++ P T K+ T + P
Sbjct: 56 RILLADIYGYCQRNKSLAKDQESDPAPGASSPTTSQSSVS-EPTPTSKPKSSGTSLLSFP 114
Query: 188 APNS 199
+ NS
Sbjct: 115 STNS 118
>SB_51043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.1 bits (57), Expect = 9.4
Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 3/149 (2%)
Frame = +2
Query: 8 RILHQSAPSFSMRSKDVVDKVEHTPAPNMYSPEKSMHMLNG--GPKYTILGKTGFTKISE 181
R LH+ ++ V + PAP + E+ + L+ PK + + +
Sbjct: 109 RYLHRLPAPKDKSMEERVRNLHRLPAPKDKAMEERVKYLHRLPAPKDKAMEER-VRNLHR 167
Query: 182 TPAPNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAPEKSLHSLDNTP-KFT 358
PAP ++ K LH +E++ PAP A E+ + L P
Sbjct: 168 LPAPKDKAMEERVKYLHRLPAPKDKAMEERVSYLHRLPAPKDKAMEERVSYLHRLPAPKD 227
Query: 359 MAGKGNNPKIENIPAPNSYNPDKADKLLH 445
A + + +PAP + ++ + LH
Sbjct: 228 KAMEERVRYLHRLPAPKDKSMEERVRNLH 256
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 284 SESPAPNVYAPEKSLHSLDNTPKFTMAGKGNNPKIE--NIPAPNSYNPDKADKLLHESSP 457
S A ++ P + + DN A G N K + + N + DK DKL + S+P
Sbjct: 119 SRFQALDIEEPAEEANDDDNDDFALSASSGKNKKKDKKDKKQKNKIDDDKEDKLTNTSTP 178
Query: 458 AYSFRPKNI 484
+ + P +
Sbjct: 179 SENVSPDKL 187
>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
Length = 702
Score = 27.1 bits (57), Expect = 9.4
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Frame = +2
Query: 17 HQSAPSFSMRSKDVVDKVEHTPAPNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPA-- 190
H +P+F + H PAP P +H+ K+ + T P
Sbjct: 393 HSQSPTFRAPQSE-----PHFPAPTFRVPFSELHI-----KFPLSEPHSQTPTFRAPQSE 442
Query: 191 PNSYEPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAPEKSLHSLDNT 346
P+S P S S T R + S +P V AP+ LHS T
Sbjct: 443 PHSQSPTVRAPQSEPHSQSSTVRAPQS---EPHSQSPTVRAPQSELHSQSPT 491
>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 27.1 bits (57), Expect = 9.4
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +2
Query: 179 ETPAPNSY--EPQKADKVLHESSPSYTFRTKEQIVLRSESPAPNVYAP-EKSLHSLDNTP 349
+TP N EP++ +KV E +P KE+ ++P V AP E+ ++TP
Sbjct: 213 DTPEANKTPEEPKEDEKVTEEETP------KEETPKVEDAP-EEVEAPKEEESPKEEDTP 265
Query: 350 KFTMAGKGNNPKIENIPAPNSYNPDKADKL 439
K A K + PK E P ++ K+
Sbjct: 266 KEEDAPKEDTPKEEAKEEPKEDTKEEPKKI 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,828,952
Number of Sequences: 59808
Number of extensions: 331096
Number of successful extensions: 869
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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