Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 285 3e-78
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 285 4e-78
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 285 4e-78
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 149 3e-37
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 146 2e-36
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 95 6e-21
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 50 3e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 1e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 7e-05
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.011
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.015
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.18
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.24
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.32
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 0.97
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 0.97
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.3
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 1.7
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 5.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 6.8
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 285 bits (699), Expect = 3e-78
Identities = 132/172 (76%), Positives = 149/172 (86%)
Frame = +2
Query: 5 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 184
AWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLII 116
Query: 185 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 364
GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S+
Sbjct: 117 GGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSN 174
Query: 365 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 520
+IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L
Sbjct: 175 FIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTL 226
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 285 bits (698), Expect = 4e-78
Identities = 131/172 (76%), Positives = 149/172 (86%)
Frame = +2
Query: 5 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 184
AWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILII 116
Query: 185 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 364
GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S+
Sbjct: 117 GGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSN 174
Query: 365 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 520
+IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L
Sbjct: 175 FIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTL 226
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 285 bits (698), Expect = 4e-78
Identities = 131/172 (76%), Positives = 149/172 (86%)
Frame = +2
Query: 5 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 184
AWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILII 116
Query: 185 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 364
GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S+
Sbjct: 117 GGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSN 174
Query: 365 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 520
+IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L
Sbjct: 175 FIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTL 226
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 149 bits (360), Expect = 3e-37
Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 3/160 (1%)
Frame = +2
Query: 5 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 184
AW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V
Sbjct: 227 AWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286
Query: 185 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 364
+ FE G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS
Sbjct: 287 DSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSD 344
Query: 365 Y-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKG 475
+ IK +G+ + V FVPIS G N++ + S W+KG
Sbjct: 345 FLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 146 bits (354), Expect = 2e-36
Identities = 67/161 (41%), Positives = 105/161 (65%), Gaps = 4/161 (2%)
Frame = +2
Query: 5 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 184
+W LD ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL++
Sbjct: 288 SWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVI 347
Query: 185 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 364
+A GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S
Sbjct: 348 SARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSM 407
Query: 365 YIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKG 475
+++++ GYN V ++P+S + G N+ + S+ PW++G
Sbjct: 408 FLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG 448
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 95.1 bits (226), Expect = 6e-21
Identities = 50/118 (42%), Positives = 73/118 (61%)
Frame = +2
Query: 14 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 193
+DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A
Sbjct: 91 IDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSAT 150
Query: 194 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 367
G+ QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 151 DGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 49.6 bits (113), Expect = 3e-07
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +2
Query: 11 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 190
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-- 124
Query: 191 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 304
+ AG+ QT+ A G+ ++I VNKMD
Sbjct: 125 ---DGSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +2
Query: 14 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 181
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 182 VAAGTG 199
V A G
Sbjct: 155 VDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 7e-05
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +2
Query: 92 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 271
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 272 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 370
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.011
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Frame = +2
Query: 14 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 136
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 137 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 244
+ D AVL++ A +G I+ + Q R +
Sbjct: 161 EVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.015
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 44 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 199
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.18
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 89 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 199
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 17 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 139
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.32
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 101 IIDAPGHRDFIKNMITGTSQADCAVLIV 184
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 89 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 184
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 89 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 184
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 32 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 184
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 321 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 491
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 492 RKA 500
++
Sbjct: 205 SQS 207
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 299 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 469
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 350 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 475
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 148 CDHVLDEISVSRSINDGNIVLASFEL 71
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,213
Number of Sequences: 5004
Number of extensions: 47370
Number of successful extensions: 177
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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