Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          145   2e-35
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             113   1e-25
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                111   4e-25
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              42   3e-04
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     42   3e-04
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               35   0.035
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.062
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              31   0.58 
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.0  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   4.1  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)                    27   9.4  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  145 bits (351), Expect = 2e-35
 Identities = 61/129 (47%), Positives = 93/129 (72%)
 Frame = +2

Query: 5   AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 184
           +W LD  + ER++G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL++
Sbjct: 194 SWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVI 253

Query: 185 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 364
           +A  GEFE G  + GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ 
Sbjct: 254 SARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTP 313

Query: 365 YIKKIGYNP 391
           ++KK+G+NP
Sbjct: 314 FLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  113 bits (271), Expect = 1e-25
 Identities = 50/84 (59%), Positives = 65/84 (77%)
 Frame = +2

Query: 53  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 232
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 233 TREHALLAFTLGVKQLIVGVNKMD 304
           TREHA+L  +LGV QLIV +NK+D
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLD 84


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  111 bits (266), Expect = 4e-25
 Identities = 50/52 (96%), Positives = 51/52 (98%)
 Frame = +2

Query: 5   AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 160
           AWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 9   AWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 31.5 bits (68), Expect = 0.44
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 434 NMLEPSTKMPWFKGWQVER 490
           NM+  +++MPWFK W +ER
Sbjct: 53  NMITGTSQMPWFKQWTIER 71


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 30/117 (25%), Positives = 52/117 (44%)
 Frame = +2

Query: 20  KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 199
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A    
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100

Query: 200 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 370
                     QT EH      + +K +++  NK+D  +   ++ ++++I K V   I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +2

Query: 17  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 196
           D ++ ER+RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 197 G 199
           G
Sbjct: 115 G 115


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 29/107 (27%), Positives = 45/107 (42%)
 Frame = +2

Query: 44  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 223
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA           
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177

Query: 224 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 364
             QT+E    A   GV  +I  +NK+D    P + P  + IK ++S+
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKIDK---PNANP--DNIKTQLST 216


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +2

Query: 95  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 274
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 275 QLIVGVNKMD 304
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
 Frame = +2

Query: 17  DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 157
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G  
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122

Query: 158 QADCAVLIVAAGTGEFEAGISKNGQTR 238
               A +I   GT   E G  ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -3

Query: 369  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 217
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 216  IPASNSPVPAAT 181
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 101 IIDAPGHRDFIKNMITGTSQADCAVLIV 184
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 11   VLDKLKAERERGITI 55
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 422 WHGDNMLEPSTKMPWFKGWQVERKE 496
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 89  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 199
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 305  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 445
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 478 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 368
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 176 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 352
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 353 EVSS 364
              S
Sbjct: 425 RTVS 428


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
 Frame = +2

Query: 146  TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG--VNKMDSTEPP 319
            TGT+  D  + +     G+F++ ++ N  +    LLA  +G+ +   G  V++  ST   
Sbjct: 790  TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848

Query: 320  YS-------EPRFEEIKKEVSS 364
             S       EP  EE+   +SS
Sbjct: 849  ASTGIMSTAEPHVEELNSGISS 870


>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
          Length = 848

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 428 GDNMLEPSTKMPWFKGWQVERKEGKADGK 514
           GDN  + S+++PWF   Q ++ + KAD K
Sbjct: 191 GDNTSKVSSEVPWFN--QRQKPKDKADSK 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,215,623
Number of Sequences: 59808
Number of extensions: 368875
Number of successful extensions: 1160
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)