Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D01f
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 134 3e-33
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 2.2
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 25 3.9
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 24 5.2
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 24 6.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 6.8
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 23 9.0
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 23 9.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 23 9.0
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 23 9.0
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 23 9.0
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 134 bits (324), Expect = 3e-33
Identities = 65/101 (64%), Positives = 78/101 (77%)
Frame = +3
Query: 12 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 191
ALLSV DKTGLL LAK+L+ G++L+ SGGTA +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3 ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62
Query: 192 TLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPVR 314
TLHPAVH GILAR SD++D+ Q E I +VVCNLYP R
Sbjct: 63 TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFR 103
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 2.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 128 PHSSRCVGHHESTGDARRSGENFTSSGT 211
PHS GH +ST + S N S GT
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGT 274
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 24.6 bits (51), Expect = 3.9
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 225 ARLSDSDQED-MKRQKYEMISVVVCNLYPV 311
AR D+E +K KY++ S + C+ PV
Sbjct: 453 ARFRPCDEESFLKENKYKVFSCITCHNSPV 482
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 24.2 bits (50), Expect = 5.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 29 GQNGATLVSKEPVGMWPAVDCQWRY 103
G+NG T VS P G + W Y
Sbjct: 805 GKNGITSVSSSPFGSAGILPISWAY 829
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 18 LSVSDKTGLLSLAKSLSECGLQLIAS 95
LSV D+ GL++ SLS G ++S
Sbjct: 574 LSVEDRAGLIADVASLSRAGYGKVSS 599
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 51 LAKSLSECGLQLIASGGTATALRN 122
L K+L + L LI SGG+ LRN
Sbjct: 498 LLKNLLKFVLHLIQSGGSVVELRN 521
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 153 ITRAPEMLGGRVKTLHPAVHAGILARLSDSDQEDMKRQKYEMI 281
ITR E+LGG++ T H + AR + E R E++
Sbjct: 81 ITRESELLGGQLSTQITREHIILTARFLNEYLEYYARLLAEVV 123
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 99 RHWQSTAGHIPTGS 58
+HW S G+ PTGS
Sbjct: 24 KHWWSRKGYHPTGS 37
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 136 TVRPAFRSAVAVPPL 92
T PAF+SA+A+P +
Sbjct: 398 TAEPAFKSAMAIPDM 412
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/59 (18%), Positives = 27/59 (45%)
Frame = +3
Query: 117 RNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDQEDMKRQKYEMISVVV 293
R + V + D+ R ++ + +HA + R SDQ++++R + + ++
Sbjct: 280 RQGSIIVNTMFDVRRIDNLVSSIASYKYILLHAKLKNRAFVSDQKELERVSLQTLHPIL 338
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 183 RVKTLHPAVHAGILARLSDSDQEDMKR 263
++KTLHP V G A L+ D ++ +
Sbjct: 93 KMKTLHPDVAQGKDAALAQRDSAELSK 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,606
Number of Sequences: 5004
Number of extensions: 24200
Number of successful extensions: 77
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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