Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D01f
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 94 3e-20
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 29 1.2
04_01_0408 - 5393354-5393659,5393974-5394219,5394442-5394583,539... 29 1.2
03_01_0112 + 902459-902770,903275-903280 28 2.0
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 27 2.7
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 27 3.6
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 27 3.6
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454... 27 4.7
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 27 4.7
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 27 4.7
10_01_0350 + 3847514-3848014 26 6.2
05_05_0091 + 22319411-22320901 26 6.2
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 26 6.2
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 26 6.2
05_01_0125 - 853691-853984,854027-854659 26 6.2
04_01_0497 - 6522998-6523669,6523684-6523716 26 6.2
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 26 6.2
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010... 26 8.3
07_03_0869 - 22168805-22169701 26 8.3
07_03_0827 + 21785603-21785734,21786049-21786339 26 8.3
03_05_0998 - 29574286-29574308,29574400-29574490,29574578-295747... 26 8.3
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 93.9 bits (223), Expect = 3e-20
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +3
Query: 6 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 185
K AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML GR
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 186 VKTLHPAVHAGILARLSDSDQ-EDMKRQKYEMISVVVCNLYP 308
VKTLHP+VH GILAR + + VVV NLYP
Sbjct: 106 VKTLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYP 147
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 112 AVAVPPLAINCRPHSDRLFANESSPVLSETLRRASF 5
AV PP+A CRPH RL ++ V + L R+ +
Sbjct: 20 AVLHPPVASACRPHPPRLIRCGAAAVPDDELLRSLY 55
>04_01_0408 -
5393354-5393659,5393974-5394219,5394442-5394583,
5394981-5395076,5395153-5395265,5395345-5395559,
5395645-5395742,5395815-5395935,5396020-5396240,
5396625-5396805,5396906-5397188,5397346-5397395,
5398565-5398805
Length = 770
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/57 (40%), Positives = 26/57 (45%)
Frame = +2
Query: 83 VDCQWRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTRWYLSSIIGL*PGR 253
+DC R RH RRPH S TG RR S+GTR +SS G GR
Sbjct: 37 LDC--RRRHNGGMRRPHVSFACSAELDTG--RR---QLPSTGTRAVMSSCPGYVEGR 86
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 182 TSEHLRCSRDVRHILNCEAGVPK 114
T+ LR RD RH+ CE+GVPK
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPK 79
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 126 RRSEAPWRYRHWQSTAGHIPTGS 58
RR PW++ HWQ+ G + + S
Sbjct: 20 RRPVHPWQWHHWQNLLGLLSSSS 42
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 77 PAVDCQWRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTRWYLSSII 235
PA+ RH R SSR GH + GD SG +G W +I
Sbjct: 726 PALSPMGSPRHSVG-RDSSSSRFSGHPKRKGDKSSSGRKGAPAGKGWQEIGVI 777
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 96 GGTATALRNAGLTVQDVSDITRAPEMLGGRVKT 194
GGTAT LR GL V +S + GGR +T
Sbjct: 370 GGTATELRRRGLCVAALSPAVVSLAAEGGRRRT 402
>12_02_0869 -
23844378-23844689,23844924-23845233,23845322-23845447,
23845522-23845727,23845832-23845964,23846045-23846208,
23846856-23846948,23847074-23847196,23847318-23847384,
23847473-23847564,23847667-23847779,23847796-23847845,
23848098-23848189
Length = 626
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 249 PGQSPIIELRYQRVPLDVKFSPDLRASPVL 160
PG+ P+ + +R+ L V S +RASP++
Sbjct: 52 PGEQPLSRIAVERMVLAVNESAHVRASPLV 81
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 316 GRTGYRLQTTTLIISYF*R---FMSSWSESDNRAKIPACTA 203
GR+ + LQ+T+LII YF F S +A + +CTA
Sbjct: 1028 GRSRFGLQSTSLIIKYFVSPLFFTSPTQVHTAKATMSSCTA 1068
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 201 PAVHAGILARLSDSDQEDMKR 263
PA AGI+ARL D +D++R
Sbjct: 99 PAEAAGIIARLKDKSVDDLQR 119
>10_01_0350 + 3847514-3848014
Length = 166
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 104 RHGASERRPHSSRCVGHHESTGDAR 178
RH A RR H R VG GD R
Sbjct: 104 RHSARARRGHRRRWVGRERLGGDGR 128
>05_05_0091 + 22319411-22320901
Length = 496
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 253 SSWSESDNRAKIPACTAGCKVFTRPPSISGALV 155
S WS+S +A I A C VF R + GA V
Sbjct: 212 SLWSQSYEKAVILMARAACAVFVRVCVVFGAHV 244
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Frame = +2
Query: 62 PVGMWPAVDCQWRYRHGASERRPHS-----SRCVGHHESTGDARRSGENFTSSGTRWYLS 226
P G WP + Y +S PHS ++ V H G A G S LS
Sbjct: 63 PPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLS 122
Query: 227 S 229
S
Sbjct: 123 S 123
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 168 EMLGGRVKTLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPV 311
E+L L H+G A L D +ED+ R Y + S + L P+
Sbjct: 257 ELLAQYATPLLEKEHSGCFALLRDDKEEDLSRM-YRLFSKINRGLEPI 303
>05_01_0125 - 853691-853984,854027-854659
Length = 308
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 330 FRYRLDEXGTGYRPPRLSSRTSDVSCLPG 244
F ++ G+ Y PPRLSSR ++ L G
Sbjct: 268 FSVGAEQFGSVYMPPRLSSRMRHLTNLDG 296
>04_01_0497 - 6522998-6523669,6523684-6523716
Length = 234
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 113 ASERRPHSSRCVGHHESTGDARRSGENFTSSGTRWYLSSI 232
AS +P+S R E R SG RW+LSSI
Sbjct: 34 ASILKPYSRRASDKEEDNCGGRSSGGVHRELQIRWWLSSI 73
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -3
Query: 217 PACTAGCKVFTRPP--SISGALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANES 44
PA A K+ + P ++S A S TS + + SAV A++C S+ L +E
Sbjct: 516 PAAAAPFKISSPSPDATVSQASAPSPTSVIAQASLDSAVGELRAAVSCLCTSEELADSER 575
Query: 43 SPVLSETLRR 14
S + E L R
Sbjct: 576 SVLRIERLWR 585
>10_06_0112 +
10899079-10900656,10900761-10900920,10900948-10901028,
10901264-10901517
Length = 690
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 74 WPAVDCQWRYRHG---ASERRPHSSRCVGHHESTGDARRS 184
WP ++ Y H AS P + CV H+E + AR++
Sbjct: 555 WPRSHNKFHYSHINFLASPTGPSAVECVNHNEESDRARKN 594
>07_03_0869 - 22168805-22169701
Length = 298
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -3
Query: 259 FMS--SWSESDNRAKIPACTAGCKVFTRPPSI 170
FMS SW + R ++ CK+F P ++
Sbjct: 246 FMSGHSWDSEEQRTRLKNLARDCKIFNEPQAL 277
>07_03_0827 + 21785603-21785734,21786049-21786339
Length = 140
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 243 QSPIIELRYQRVPLDVKFSPDLRASPVLS*CPTHLEL 133
Q+PI++ Y R+P DVK + ++ + S H E+
Sbjct: 96 QAPILKKVYVRIPKDVKSISNTKSKKIRSIIDGHPEI 132
>03_05_0998 -
29574286-29574308,29574400-29574490,29574578-29574751,
29574831-29574902,29574983-29575051,29575129-29575194,
29575292-29575483,29575589-29575704,29575843-29576023
Length = 327
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 126 GLTVQDVSDITRAPEMLGGRVKTLHPAVH-AGILARLSDSDQEDMKRQK 269
G T+QD+S + + P M G H + G +A S ++ MK +K
Sbjct: 279 GTTIQDISTVNQIPAMWEGLQNIPHLNYNPGGAMAEGSTNNSGSMKIEK 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,752,423
Number of Sequences: 37544
Number of extensions: 197845
Number of successful extensions: 681
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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