Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304D01f
         (330 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             148   9e-37
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      44   2e-05
SB_28107| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.92 
SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)                      28   1.6  
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_56303| Best HMM Match : Phage_Mu_Gam (HMM E-Value=4.9)              27   3.7  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 27   4.9  
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    26   6.5  
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  26   6.5  
SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)                 26   8.5  
SB_42231| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)                 26   8.5  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  148 bits (359), Expect = 9e-37
 Identities = 70/102 (68%), Positives = 84/102 (82%)
 Frame = +3

Query: 3   GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGG 182
           G LALLSVS+K GL+  AK L + G +L+ASGGTA A+RNAG+ V+DVS+IT APEMLGG
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92

Query: 183 RVKTLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYP 308
           RVKTLHPAVH GILAR+S+ D+ DM +Q +E I VVVCNLYP
Sbjct: 93  RVKTLHPAVHGGILARVSEGDKADMAKQGFEYIRVVVCNLYP 134


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +3

Query: 219 ILARLSDSDQEDMKRQKYEMISVVVCNLYP 308
           ILAR+S+ D+ DM +Q +E I VVVCNLYP
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYP 31


>SB_28107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 255 CLPGQSPIIELR---YQRVPLDVKFSPD 181
           C+P + PI E R   Y R+P  ++F PD
Sbjct: 687 CIPAEKPIEESRRKNYPRLPATIRFDPD 714


>SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)
          Length = 281

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 312 EXGTGYRPPRLSSRTSDVSCLPGQSPIIELRYQRVPLD 199
           + G G  PPR+    S V+     +P ++L + R P+D
Sbjct: 179 DRGRGNIPPRVEKALSSVAKKTEDTPSLKLTFSRTPVD 216


>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 312 EXGTGYRPPRLSSRTSDVSCLPGQSPIIELRYQRVPLD 199
           + G G  PPR+    S V+     +P ++L + R P+D
Sbjct: 863 DRGRGNIPPRVEKALSSVAKKTEDTPSLKLTFSRTPVD 900


>SB_56303| Best HMM Match : Phage_Mu_Gam (HMM E-Value=4.9)
          Length = 308

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +3

Query: 84  LIASGGTATALRNAGLTVQDVSDIT----RAPEMLGGRVKTL 197
           L+ SG  +TAL N+G T+  VS  T    R+P  L G ++++
Sbjct: 156 LVVSGALSTALENSGKTLIFVSGRTHNRSRSPRPLRGDIRSV 197


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 18  LSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGL 131
           L +S KTG   +   L E G  +  SG   TAL  A L
Sbjct: 179 LHISCKTGREEIVIMLLEAGADINQSGANGTALHEAAL 216


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 306  GTGYRPPRLSSRTSDVSCLPGQSPIIE 226
            G+ +  PRL+ R  DV  LPG+  +++
Sbjct: 1121 GSVFASPRLAQRDDDVISLPGRMDLVD 1147


>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = -3

Query: 217 PACTAGCKVFTRPPSISGALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESSP 38
           P C A C   T PPS+S    +     +      SA  V P+  +  P +D   +N+ + 
Sbjct: 685 PLCQASCVNQTAPPSLSRVQPLDRKLPSTLTDVISADRVIPINASHNPSADLQSSNQPNK 744

Query: 37  VLSETLR 17
            +S  ++
Sbjct: 745 TVSTAVQ 751


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 127 PAFRSAVAVPPLAINCRPHSDRLFANESSPV 35
           P  R+ V V P+A +CR  S RL  +  SP+
Sbjct: 145 PPSRAQVDVFPIACSCRCDSHRLLMSMCSPL 175


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 107 HGASERRPHSSRCVGHHESTG-DARRSGENFTSSGTRWYLS-SIIGL*PGRHETSEVRDD 280
           HG S  R HSS   G+H++T      SG +   SG   Y S S   L  G H ++  R+ 
Sbjct: 637 HGDSSLRVHSS---GNHDNTSLSGVSSGSHGNFSGNGIYRSRSTSNLSHGNHGSTTTRNM 693

Query: 281 KRG 289
             G
Sbjct: 694 SSG 696


>SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)
          Length = 646

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 88  LPVAVPPRRFGTPASQFKMCRTSREHRR 171
           L V VPP     P+ ++   R +REHR+
Sbjct: 148 LVVTVPPLALVKPSRKYVSLRDTREHRK 175


>SB_42231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 88  LPVAVPPRRFGTPASQFKMCRTSREHRR 171
           L V VPP     P+ ++   R +REHR+
Sbjct: 95  LVVTVPPLALVKPSRKYVSLRDTREHRK 122


>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
          Length = 635

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 253 SSWSESDNRAKIPACTAGC 197
           S W++S N    P C+ GC
Sbjct: 86  SGWAQSGNSCPTPICSKGC 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,868,455
Number of Sequences: 59808
Number of extensions: 219097
Number of successful extensions: 795
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)