Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D01f
(330 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 139 5e-34
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 32 0.11
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 28 1.4
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 28 1.4
AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical ... 27 2.4
Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 27 4.2
U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical pr... 27 4.2
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 5.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 5.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 5.5
AL117204-12|CAB55127.1| 385|Caenorhabditis elegans Hypothetical... 26 5.5
Z92786-6|CAB07208.1| 569|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical p... 26 7.3
Z70035-1|CAA93861.1| 432|Caenorhabditis elegans Hypothetical pr... 26 7.3
AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical ... 26 7.3
AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear recep... 26 7.3
Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical p... 25 9.7
U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical pr... 25 9.7
U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical pr... 25 9.7
U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF025452-4|AAB70945.1| 642|Caenorhabditis elegans Hypothetical ... 25 9.7
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 139 bits (336), Expect = 5e-34
Identities = 64/102 (62%), Positives = 82/102 (80%)
Frame = +3
Query: 9 LALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRV 188
LA++SVSDKTGL+ LA L GL LIASGGTA A+R+ G+ V DV+D+T+ PEMLGGRV
Sbjct: 7 LAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEMLGGRV 66
Query: 189 KTLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPVR 314
KTLHPAVH GILAR ++SD++D+++ +SVVVCNLYP +
Sbjct: 67 KTLHPAVHGGILARDTESDRKDLEKHNISFVSVVVCNLYPFK 108
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +2
Query: 92 QWRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTR---WYLSSIIGL*PGRHET 262
++R RHG E P R HH G+ + EN + ++ + + G+ P +
Sbjct: 213 KYRPRHGEEEEEPSRER--EHHHHRGEEKPETENIAETPSKVVGLNMQMVAGVYPKEKKG 270
Query: 263 SEVRD-DKRGG 292
V D DKRGG
Sbjct: 271 PVVEDVDKRGG 281
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 189 KTLHPAVHAGIL-ARLSDSDQEDMK 260
K+LHP+VHA +L +SD D ED++
Sbjct: 996 KSLHPSVHALVLEPMMSDPDGEDVE 1020
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 189 KTLHPAVHAGIL-ARLSDSDQEDMK 260
K+LHP+VHA +L +SD D ED++
Sbjct: 1081 KSLHPSVHALVLEPMMSDPDGEDVE 1105
>AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical
protein C41H7.2 protein.
Length = 170
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 195 KFSPDLRASPVLS*CPTHLEL*GRRSEAPWRYRHWQSTAGH 73
KF R P S C T + G +EAP +R Q+TA +
Sbjct: 128 KFPATPRILPTRSSCSTACQSSGEENEAPKNHRKAQTTAAY 168
>Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical
protein R13.4 protein.
Length = 803
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 129 GRRSEAPWRYRHWQSTAGHIPTGSLLTRVAPFCPKR*EEL 10
G+R AP + + A PTG+L +P CP+ ++L
Sbjct: 113 GKRKRAPPKPKDPALQASSQPTGTLPVLTSPSCPQNGQQL 152
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 245 PGRHETSEVRDDK-RGGL*PVPXSSRRY 325
P RHETSE RD++ R VP SS RY
Sbjct: 2020 PIRHETSEDRDERVRFFDDEVPFSSERY 2047
>U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical
protein ZC53.6 protein.
Length = 292
Score = 26.6 bits (56), Expect = 4.2
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -3
Query: 178 PSISGALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESSPVLSETLRRASFP 2
PS S A S +RP +++ A P A H+D+LF E LRR +FP
Sbjct: 6 PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFP 56
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 294 RPPRLSSRTSDVSCLPGQS 238
RPPR S+T+D +CL +S
Sbjct: 2448 RPPRSKSKTADANCLQIES 2466
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 294 RPPRLSSRTSDVSCLPGQS 238
RPPR S+T+D +CL +S
Sbjct: 2448 RPPRSKSKTADANCLQIES 2466
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 294 RPPRLSSRTSDVSCLPGQS 238
RPPR S+T+D +CL +S
Sbjct: 2448 RPPRSKSKTADANCLQIES 2466
>AL117204-12|CAB55127.1| 385|Caenorhabditis elegans Hypothetical
protein Y116A8C.21 protein.
Length = 385
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 250 SWSESDNRAKIPACTAGCKVFTRPPSI 170
SWS+++N C G +F+RP SI
Sbjct: 119 SWSKTENGWTTRLCKNGWMLFSRPDSI 145
>Z92786-6|CAB07208.1| 569|Caenorhabditis elegans Hypothetical
protein F47H4.9 protein.
Length = 569
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 160 LVMSDTS*TVRPAFRSAVAVPPLAINCR 77
+ ++DT T RP FR AV +P I+ R
Sbjct: 54 IFVNDTPITPRPLFRVAVTIPNSQISIR 81
>Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 101 YRHGASERRPHSSRCVGHHESTGDARRSGENFT 199
Y+H A H+S HH +TG R +N T
Sbjct: 61 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNST 93
>Z70035-1|CAA93861.1| 432|Caenorhabditis elegans Hypothetical
protein R09D1.1 protein.
Length = 432
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = +3
Query: 165 PEMLGGRVKTLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPVRPDG 323
P L + T HP + I+ S+++ D+ +++ ++ + ++PDG
Sbjct: 59 PTTLDKAMPTEHPDCNKRIIGYYSENETTDITKRQLSQLTHAIFAFIKLQPDG 111
>AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 101 YRHGASERRPHSSRCVGHHESTGDARRSGENFT 199
Y+H A H+S HH +TG R +N T
Sbjct: 61 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNST 93
>AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 489
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 101 YRHGASERRPHSSRCVGHHESTGDARRSGENFT 199
Y+H A H+S HH +TG R +N T
Sbjct: 35 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNST 67
>Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 315 DEXGTGYRPPRLSSRTSDVSCLPGQSPIIELRYQRVPLDVKFSPDLRASPVLS*CPTHLE 136
D T PP+ +R L +SP+++ ++ PL + S + R S L THLE
Sbjct: 823 DNMCTLLNPPKYLNRAQSDEQL--RSPLMDELNRKAPLSARESTNERESSELVRIQTHLE 880
>Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 315 DEXGTGYRPPRLSSRTSDVSCLPGQSPIIELRYQRVPLDVKFSPDLRASPVLS*CPTHLE 136
D T PP+ +R L +SP+++ ++ PL + S + R S L THLE
Sbjct: 823 DNMCTLLNPPKYLNRAQSDEQL--RSPLMDELNRKAPLSARESTNERESSELVRIQTHLE 880
>U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical
protein M03A1.6b protein.
Length = 753
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 91 PVAVPPRRFGTPASQFKMCRTSREHRRCSEV 183
PVA PPR GTP + + R +CSEV
Sbjct: 35 PVA-PPRPSGTPVAPQRNRRRKVTELKCSEV 64
>U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6d protein.
Length = 762
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 91 PVAVPPRRFGTPASQFKMCRTSREHRRCSEV 183
PVA PPR GTP + + R +CSEV
Sbjct: 44 PVA-PPRPSGTPVAPQRNRRRKVTELKCSEV 73
>U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6c protein.
Length = 762
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 91 PVAVPPRRFGTPASQFKMCRTSREHRRCSEV 183
PVA PPR GTP + + R +CSEV
Sbjct: 44 PVA-PPRPSGTPVAPQRNRRRKVTELKCSEV 73
>AF025452-4|AAB70945.1| 642|Caenorhabditis elegans Hypothetical
protein B0454.8 protein.
Length = 642
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 279 SSRTSDVSC--LPGQSPIIELRYQRVPLDVKFSP 184
S+ T +SC + G + +++L Q +PL+ +F P
Sbjct: 568 STSTMKISCSAIDGYTVLMQLNAQTIPLEGQFEP 601
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,720,571
Number of Sequences: 27780
Number of extensions: 147601
Number of successful extensions: 411
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -