Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304D01f
(330 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei... 97 2e-21
At5g61100.1 68418.m07666 hypothetical protein 28 1.3
At2g45150.3 68415.m05621 phosphatidate cytidylyltransferase fami... 28 1.3
At4g36980.1 68417.m05240 expressed protein 27 2.3
At4g19450.1 68417.m02861 nodulin-related weak similarity to nodu... 27 4.0
At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinosit... 27 4.0
At3g27540.1 68416.m03442 glycosyl transferase family 17 protein ... 27 4.0
At1g60710.1 68414.m06834 aldo/keto reductase family protein cont... 27 4.0
At1g10460.1 68414.m01178 germin-like protein (GLP7) identical to... 27 4.0
At4g31570.1 68417.m04483 expressed protein 26 5.3
At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low simi... 26 5.3
At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transfera... 26 7.0
At4g21770.1 68417.m03150 pseudouridine synthase family protein c... 25 9.3
At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT... 25 9.3
At2g45150.2 68415.m05619 phosphatidate cytidylyltransferase fami... 25 9.3
At2g45150.1 68415.m05620 phosphatidate cytidylyltransferase fami... 25 9.3
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 25 9.3
At1g33050.2 68414.m04070 expressed protein 25 9.3
At1g33050.1 68414.m04069 expressed protein 25 9.3
>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
similar to SP|P12048 Bifunctional purine biosynthesis
protein purH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (EC 2.1.2.3) (AICAR transformylase);
IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
MGS-like domain
Length = 596
Score = 97.5 bits (232), Expect = 2e-21
Identities = 50/102 (49%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = +3
Query: 6 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 185
K AL+S+SDK L SL L E G ++++GGTA+ L NAG++V V +T PEML GR
Sbjct: 72 KQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTHFPEMLDGR 131
Query: 186 VKTLHPAVHAGILARLS-DSDQEDMKRQKYEMISVVVCNLYP 308
VKTLHP +H GILAR + E + VVV NLYP
Sbjct: 132 VKTLHPNIHGGILARRDVEHHMEALNEHGIGTFDVVVVNLYP 173
>At5g61100.1 68418.m07666 hypothetical protein
Length = 227
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 142 MCRTSREHRRCSEVG*KLYIQRYTLVS*LDYRTLTRKT*NVRSTR 276
MCR +REH C+ V + + + D+ ++ KT N +S+R
Sbjct: 51 MCRDTREHTYCARVMFQRVPRLWICEECRDFSSVANKTANAQSSR 95
>At2g45150.3 68415.m05621 phosphatidate cytidylyltransferase family
protein contains Pfam profile: PF01148 phosphatidate
cytidylyltransferase
Length = 382
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = -3
Query: 211 CTAGCKVFTRPPSI----SGALVMSDTS*TVRPAF-RSAVAVPPLAINCRPHSDRLFANE 47
CT C+ FTR P I SG + DT R R +V+ L R SD+L ++
Sbjct: 14 CTCPCRSFTRKPLIRPPLSGLRLPGDTKPLFRSGLGRISVSRRFLTAVARAESDQLGDDD 73
Query: 46 SSPVLSETLRRAS 8
S + + ++AS
Sbjct: 74 HSKNVEDKQKKAS 86
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 300 GYRPPRLSSRTSDVSCLPGQSPIIELRYQRVPLDVKFSPDLRASPVLS 157
GY PPR SD+ P I+E + D+ D A P S
Sbjct: 355 GYSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKS 402
>At4g19450.1 68417.m02861 nodulin-related weak similarity to
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 572
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 33 KTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVS 149
+TG L++A + L L+AS GTA+AL+ AG + +S
Sbjct: 420 RTGWLAIALLPTPFALFLLASSGTASALQ-AGTALMGLS 457
>At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinositol
de-N-acetylase-related similar to SP|Q9Y2B2
N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(EC 3.5.1.-) (Phosphatidylinositol-glycan biosynthesis,
class L protein) (PIG-L) {Homo sapiens}
Length = 257
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 199 CKVFTRPPSISGALVMSD 146
CK+F R SISGA ++ D
Sbjct: 19 CKIFFRATSISGAAILDD 36
>At3g27540.1 68416.m03442 glycosyl transferase family 17 protein low
similarity to beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
from Mus musculus [SP|Q10470], Rattus norvegicus
[SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
profile PF04724 :Glycosyltransferase family 17
Length = 390
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 288 PRLSSRTSDVSCLPGQSPIIELRYQRVPLD 199
PRL+ T G++P +E YQRV LD
Sbjct: 168 PRLTYGTIGGRFRKGENPFVEEAYQRVALD 197
>At1g60710.1 68414.m06834 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 345
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +3
Query: 72 CGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI 221
CG++ + G + GL +S AP+ + +H A+H+G+
Sbjct: 5 CGVRRMKLGSQGLEVSAQGLGCMGLSAFYGAPKPENEAIALIHHAIHSGV 54
>At1g10460.1 68414.m01178 germin-like protein (GLP7) identical to
germin-like protein subfamily 1 member 1 [SP|P92998];
similar to ESTs gb|T88481 and gb|AI099566
Length = 217
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 321 RLDEXGTGYRPPRLSSRTSDVS-CLPG 244
RLD G+G PP + R S+V+ CL G
Sbjct: 96 RLDFGGSGVVPPHVHPRASEVTVCLDG 122
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 48 SLAKSLSECGLQLIASGGTATALRNAGL-TVQDVSDIT 158
SLA+ LSEC +L A+ + T L N L T V D T
Sbjct: 485 SLAEELSECQSKLYAATSSNTNLENQLLATEAQVEDFT 522
>At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low
similarity to acyl-CoA dehydrogenase [Acinetobacter sp.
NCIMB9871] GI:14587418; contains Pfam profiles PF01636:
Phosphotransferase enzyme family, PF00441: Acyl-CoA
dehydrogenase C-terminal domain, PF02770: Acyl-CoA
dehydrogenase middle domain
Length = 824
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 53 SKEPVGMWPAVDCQWRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTRWYLS 226
+KE + W + R R G + P + + RR G+++ +GT+W+ S
Sbjct: 535 NKEQISEWLIPLLEGRIRSGFAMTEPQVASSDATNIECS-IRRQGDSYVINGTKWWTS 591
>At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 447
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 26 FGQNGATLVSKEPVGMWPAVDCQWRYRHGASER 124
FG L+S+EP VD W + H +E+
Sbjct: 89 FGDCLKKLISEEPTAACVIVDALWYFTHDLTEK 121
>At4g21770.1 68417.m03150 pseudouridine synthase family protein
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 472
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -3
Query: 223 KIPACTAGCKVFTRPPSISGALVMSDTS*TVRPAFRSAVAVPPLAINCRPH 71
+I CT GC VF R + V+ +R A+A PL I H
Sbjct: 259 QIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYR-ALAAAPLPIGIISH 308
>At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT-3)
identical to homocysteine S-methyltransferase HMT-3
[Arabidopsis thaliana] GI:9966515; similar to
homocysteine S-methyltransferase AtHMT-2 (GI:6685163)
[Arabidopsis thaliana]; similar to selenocysteine
methyltransferase GB:P56707 from [Astragalus bisulcatus]
Length = 347
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 24 VSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQD 143
V ++T L + L +CG + GG AT L+ G + D
Sbjct: 5 VKEETSSL-MTDFLEKCGGYAVVDGGFATELQRHGADIND 43
>At2g45150.2 68415.m05619 phosphatidate cytidylyltransferase family
protein contains Pfam profile: PF01148 phosphatidate
cytidylyltransferase
Length = 287
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 211 CTAGCKVFTRPPSISGALVMSDTS*TVRPAFRSAV 107
CT C+ FTR P I L +P FRS +
Sbjct: 14 CTCPCRSFTRKPLIRPPLSGLRLPGDTKPLFRSGL 48
>At2g45150.1 68415.m05620 phosphatidate cytidylyltransferase family
protein contains Pfam profile: PF01148 phosphatidate
cytidylyltransferase
Length = 391
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 211 CTAGCKVFTRPPSISGALVMSDTS*TVRPAFRSAV 107
CT C+ FTR P I L +P FRS +
Sbjct: 14 CTCPCRSFTRKPLIRPPLSGLRLPGDTKPLFRSGL 48
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 92 QWRYRHGASERRPHSSRCVGHHESTGDARRSG 187
QW + G+ + P HH+ GD R G
Sbjct: 970 QWHGQGGSEQNNPRGYNGQHHHQQGGDHDRRG 1001
>At1g33050.2 68414.m04070 expressed protein
Length = 607
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 279 SSRTSDVSCLPGQSPIIELR 220
SS TSD+ LPG SP ++++
Sbjct: 501 SSSTSDMKALPGPSPKMDVK 520
>At1g33050.1 68414.m04069 expressed protein
Length = 693
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 279 SSRTSDVSCLPGQSPIIELR 220
SS TSD+ LPG SP ++++
Sbjct: 501 SSSTSDMKALPGPSPKMDVK 520
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,352,286
Number of Sequences: 28952
Number of extensions: 140552
Number of successful extensions: 438
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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