Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 0.97
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 1.7
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 27 2.2
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.2
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 27 2.2
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 26 3.0
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 26 3.9
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 6.8
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 9.0
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 25 9.0
>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 27.9 bits (59), Expect = 0.97
Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = +1
Query: 148 ISKKVEDGTEQAQGATTSAPSPLGKSRPVGA-IESFVLDNTQQNTRQDYSFYERSNVIAS 324
+ K ++DG Q A P + + + ++ V +Q + + F A
Sbjct: 6 LGKMIQDGDFVFQKAKKGTTIPKARKKTLTKDLQVQVAKELEQESSSTFRFAYVFPRKAQ 65
Query: 325 SKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQRSLSYQTDDL 468
+ + +P R T + KR + + +P IDS S +S+ Q+ ++
Sbjct: 66 NHYYSPSRTHTSSIKKKRPKLCSNINLTPWSLIDSTSNKSIREQSREM 113
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 337 SQIWTKLSHLIVHKNYNLDECFAEY 263
+Q++T LS+ I + + LDECF E+
Sbjct: 579 NQVFTLLSNFIQNPLFVLDECFDEF 603
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 91 KNPWSAIIKIYGFSLF 44
K PW ++K+YGF LF
Sbjct: 288 KIPWLLVLKMYGFRLF 303
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 262 NTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQR 441
NTQ N S +E NV +S + ++ S+N + TA+ P RS+ SL+
Sbjct: 155 NTQNNQSTLASNHEDENVSSSGG----QEMQDHGSVNNLESPGTAIGRLPVRSVTSLADS 210
Query: 442 SLSYQT 459
++ T
Sbjct: 211 NMEDYT 216
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 376 RDINTTALPASPTRSIDSLSQRSLSYQTDDL 468
R ++ A PA+P I+ SQ S QTD L
Sbjct: 98 RSLSPPATPATPRSRIEGESQTSAIPQTDRL 128
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/94 (23%), Positives = 44/94 (46%)
Frame = +1
Query: 175 EQAQGATTSAPSPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVE 354
E + A T +PS K V +S ++ + + + Y+ +R + + +TP R+
Sbjct: 292 ESLKAAVTYSPSQNPKK--VAETDS---ESRKSSFQSSYNDADRPFQVGAQTQSTPNRIS 346
Query: 355 TIASINKRDINTTALPASPTRSIDSLSQRSLSYQ 456
S D++T + + T S +++SQ S+Q
Sbjct: 347 RSDSPIVYDVDTHSEDNASTASSEAISQSMRSFQ 380
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 214 LGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASS 327
L + R +I S +LD +QN R YS +R+ I S+
Sbjct: 489 LVQRRSKSSIASTILDLRKQNPRNSYSKEKRAQYIGSN 526
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 271 QNTRQDYSFYERSNVIASSKFATPKRVET--IASINKRDINTT 393
QN + + FY +NVI++S T + T +KR N T
Sbjct: 124 QNNFRYFQFYGTTNVISASNLTTTSEIPTFKFPIFSKRKYNDT 166
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 160 LFLKFSNLEDQVHTVVHRYCFSLKNPWSAIIKIYGFSLFN 41
+F SNL+ Q T +R+ + + WSAI I+ ++ N
Sbjct: 881 IFWSDSNLDMQGITQKYRFLELITSTWSAISSIHVLTITN 920
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 397 LPASPTRSIDSLSQRSLSYQ 456
LPA T+ + LS RSL YQ
Sbjct: 442 LPAKHTKRVPLLSNRSLCYQ 461
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 286 DYSFYERSNVIASSKFATPKRVETIASI 369
D+ +Y+R+ ++ F TPK T +I
Sbjct: 11 DFEYYQRNLLLQEKGFPTPKATSTGTTI 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,550
Number of Sequences: 5004
Number of extensions: 37819
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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