Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0351 + 16904075-16904738,16906285-16906366,16906533-169066... 30 0.98
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672... 29 1.7
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 28 4.0
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 28 5.2
06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596 28 5.2
04_03_0438 + 15929220-15929453,15929564-15929764,15930874-159310... 28 5.2
04_01_0188 - 2208001-2208576,2211502-2211513,2212837-2212970,221... 28 5.2
01_06_0257 + 27932119-27932187,27932371-27932470,27932560-279326... 27 6.9
07_01_0232 + 1701612-1701753,1701848-1703280 27 9.1
07_01_0228 + 1669033-1669171,1669268-1669655,1669807-1670569 27 9.1
04_04_0579 - 26355431-26355684,26355988-26356073,26356292-263563... 27 9.1
02_02_0088 - 6655493-6655601,6656057-6656259,6656382-6656594,665... 27 9.1
>09_04_0351 +
16904075-16904738,16906285-16906366,16906533-16906697,
16906811-16906929,16906930-16907156
Length = 418
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 236 PTGRLLPKGLGAEVVAPCACS 174
P R+LP GL V PCACS
Sbjct: 77 PADRILPAGLPLRVPVPCACS 97
>11_05_0065 +
18766566-18766576,18767023-18767083,18767170-18767268,
18767346-18767467,18767577-18767673,18767778-18767824,
18768020-18768203,18768349-18768400,18768795-18768985,
18769072-18770020,18770866-18771022,18771134-18771206,
18771292-18771465,18771880-18771993,18772110-18772236,
18772331-18772443,18772614-18772729,18772847-18773000
Length = 946
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 277 TRQDYSFYERSNVIASSKFATPKRV-ETIASINKRDINTTALPASPT 414
T DY ++ +S+ F KRV ET+AS K N A P+SP+
Sbjct: 266 TSNDYVLNAENSSGSSANFGCSKRVFETLASPTKTIKNMLAAPSSPS 312
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 115 VHRYCFSLKNPWSAIIK----IYGFSLFNYHLKHHESSQVF 5
VHR+CF+ K+P+ + + FS ++ H K S +F
Sbjct: 98 VHRFCFTNKSPYHETVDFDVLVSHFSYYDQHAKDEHFSALF 138
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 115 VHRYCFSLKNPWSAI----IKIYGFSLFNYHLKHHESSQVF 5
VHR+CF+ K+P+ + + FS F+ H K + +F
Sbjct: 99 VHRFCFTNKSPYHETVDFDVHVGHFSYFDQHAKDEHFAPLF 139
>06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596
Length = 196
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 241 IESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIAS 366
IESFV+D ++NT++D ++ ++ + + + E++AS
Sbjct: 153 IESFVVDIPEENTKEDICYFVKNLLRCNLRTLADVSEESLAS 194
>04_03_0438 +
15929220-15929453,15929564-15929764,15930874-15931046,
15931131-15931233,15931763-15932107
Length = 351
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +1
Query: 268 QQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQ 438
Q+N ++ +ER N +A+ K TP ++ +A ++ + + +P T I++L+Q
Sbjct: 244 QENLEKNAEIFERVNAMAARKGCTPSQL-ALAWVHHQGSDVCPIPG--TTKIENLNQ 297
>04_01_0188 -
2208001-2208576,2211502-2211513,2212837-2212970,
2213147-2213262,2214844-2215075,2218483-2218548,
2219661-2219750,2221340-2221388
Length = 424
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -2
Query: 355 FLPAWESQIWTKLSHLIVHKNYNLDECFAEYYRVRSSRLRLPDDFCLKG 209
F+ W+ K++H++V N +L+ SR+ L D C+ G
Sbjct: 356 FVRKWQLACQGKIAHVVVMPNVSLERINMFLEEFTKSRIALHQDKCVAG 404
>01_06_0257 +
27932119-27932187,27932371-27932470,27932560-27932666,
27933619-27933621,27933833-27933866,27934081-27934229,
27934676-27934822,27935019-27935129,27935548-27935647,
27936115-27936165,27937297-27937334,27937448-27937540,
27937744-27937827,27939101-27939262
Length = 415
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 322 SSKFATPKRVETIASINKRDINTTAL 399
SS+ PK VE SI+K+ +NT AL
Sbjct: 147 SSRKRAPKTVEIALSIDKKVVNTAAL 172
>07_01_0232 + 1701612-1701753,1701848-1703280
Length = 524
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -1
Query: 407 LAGRAVVLISRLLIDAIVSTRLG 339
LAG A ++IS+LLI AI++ +LG
Sbjct: 360 LAGGAQMVISQLLIGAIMAAQLG 382
>07_01_0228 + 1669033-1669171,1669268-1669655,1669807-1670569
Length = 429
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -1
Query: 407 LAGRAVVLISRLLIDAIVSTRLG 339
LAG A ++IS+LLI AI++ +LG
Sbjct: 266 LAGGAQMVISQLLIGAIMAAQLG 288
>04_04_0579 -
26355431-26355684,26355988-26356073,26356292-26356377,
26356596-26356788,26356895-26357094,26359257-26359379
Length = 313
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 346 AWESQIWTKLSHLIVHKNYNLDECFAEYYRVRSSRLRLPDD 224
+W S W + H+ +L CF Y+ + + R P D
Sbjct: 195 SWMSVFWYPIGHVPAMNKKDLTTCFLTYHSLSTLEDRTPFD 235
>02_02_0088 -
6655493-6655601,6656057-6656259,6656382-6656594,
6656683-6656792,6656878-6656981,6657076-6657245,
6657337-6657501,6657584-6657702,6657853-6657940,
6658035-6658140,6658235-6658323,6658461-6658604,
6658715-6658807,6658906-6658972,6659116-6659228,
6659306-6659401,6659524-6659724
Length = 729
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 404 AGRAVVLISRLLIDAIVSTRLGVANLDEAITFDR 303
AGR V +++ L+ A ++ +GVAN A+++DR
Sbjct: 11 AGRRVAVLAAALVAASLAASVGVAN--AAVSYDR 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,686,489
Number of Sequences: 37544
Number of extensions: 221359
Number of successful extensions: 604
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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