Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               28   5.4  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  28   5.4  

>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 274  NTRQDYSFYERSNVIASSKFATPKRV 351
            +T +D  F+   NV++S+KFAT  R+
Sbjct: 1381 STNKDIKFHPYHNVVSSTKFATTDRI 1406


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +1

Query: 163 EDGTEQAQG-ATTSAPSPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFAT 339
           + G +  +G A   +PS  G  +P     S  L +T QNT Q  S    SN+    +   
Sbjct: 244 KSGKQPTEGDAREQSPSQSGSKQP----NSEELQSTHQNTPQSSSSSSTSNISGVDQQKQ 299

Query: 340 PKRVETIASINKRDINTTALPASP 411
             + E+  S++ +   T    +SP
Sbjct: 300 ATQQESQTSVSPQTSGTDQSQSSP 323


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +1

Query: 163 EDGTEQAQG-ATTSAPSPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFAT 339
           + G +  +G A   +PS  G  +P     S  L +T QNT Q  S    SN+    +   
Sbjct: 522 KSGKQPTEGDAREQSPSQSGSKQP----NSEELQSTHQNTPQSSSSSSTSNISGVDQQKQ 577

Query: 340 PKRVETIASINKRDINTTALPASP 411
             + E+  S++ +   T    +SP
Sbjct: 578 ATQQESQTSVSPQTSGTDQSQSSP 601


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,915
Number of Sequences: 59808
Number of extensions: 262726
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)