Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    29   2.7  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    29   2.7  
AC024801-6|AAP86611.1|  197|Caenorhabditis elegans Hypothetical ...    28   4.7  
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p...    27   8.1  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    27   8.1  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    27   8.1  

>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +1

Query: 85  DSSRRNNTDEQRCVLGLQDLKISKKVEDGTEQAQGATTSAPSPLGKSRPVGAIESFVLDN 264
           D +  N+  +Q  +  L++   S  +   T+    +T +APSPL    P   IES V+ +
Sbjct: 142 DVTLANDFFQQATIQDLENTP-STPLRSQTQVGDESTPTAPSPLRSKIP---IESEVVQS 197

Query: 265 TQQNTRQDYSFYERSNV 315
           T   + Q  S +E+S +
Sbjct: 198 TSVESVQSTSQHEKSRI 214


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 211 PLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINT 390
           P+ K+ P  A    +   +++N R+  +  E+  +  ++  ATPKR  +  +IN   I +
Sbjct: 673 PVAKNGPQVAKNETLTGLSEENARKILTVEEKQALFDAASLATPKREMSGKTINPVHIES 732

Query: 391 TALPASPTRSIDSLS 435
                   RSI  LS
Sbjct: 733 HHTIGDIFRSITHLS 747


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 211 PLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINT 390
           P+ K+ P  A    +   +++N R+  +  E+  +  ++  ATPKR  +  +IN   I +
Sbjct: 673 PVAKNGPQVAKNETLTGLSEENARKILTVEEKQALFDAASLATPKREMSGKTINPVHIES 732

Query: 391 TALPASPTRSIDSLS 435
                   RSI  LS
Sbjct: 733 HHTIGDIFRSITHLS 747


>AC024801-6|AAP86611.1|  197|Caenorhabditis elegans Hypothetical
           protein Y50D7A.11 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 92  QGETIPMNNGVYLVFKI*KFQKKSRMELSRRK 187
           + +++PM NGV+ + KI +F    ++E+ R K
Sbjct: 162 EAKSVPMQNGVWNLVKICEFWGTDKIEIFREK 193


>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
           protein F26G1.1 protein.
          Length = 1021

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 238 AIESFVLDNTQQNTRQDYSFY 300
           +I SF LDNT +N R D+S +
Sbjct: 175 SIRSFSLDNTLENKRSDHSSF 195


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
           trithorax-related protein LIN-59 protein.
          Length = 1312

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 151 SKKVEDGTEQAQGATTSAPSPLGKSR 228
           SKK +D   +A+  +TS PSP+   R
Sbjct: 908 SKKAKDNAPRARALSTSCPSPVPSKR 933


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
           lineage protein 59 protein.
          Length = 1312

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 151 SKKVEDGTEQAQGATTSAPSPLGKSR 228
           SKK +D   +A+  +TS PSP+   R
Sbjct: 908 SKKAKDNAPRARALSTSCPSPVPSKR 933


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,717
Number of Sequences: 27780
Number of extensions: 207703
Number of successful extensions: 597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)