Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   5.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   5.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +1

Query: 139  DLKISKKVEDGTEQAQGATTSAPSPLGKSRPVGAIESFVLDNTQQNTRQDYSFYER 306
            DL  S       +      TS P+PL  SR     E    D+T+ +T+ D S  ER
Sbjct: 1376 DLSPSPSDRGRNDDGSDRLTSPPTPLSISRAGSRDE----DSTRDSTKLDRSSRER 1427


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 365 LSINGILIRLLSL 403
           LSING LIR++++
Sbjct: 163 LSINGALIRIIAI 175


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 365 LSINGILIRLLSL 403
           LSING LIR++++
Sbjct: 129 LSINGALIRIIAI 141


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 365 LSINGILIRLLSL 403
           LSING LIR++++
Sbjct: 39  LSINGALIRIIAI 51


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 425 SIDLVGLAGRAVVLIS 378
           +I +VG  GRA+V++S
Sbjct: 86  TIKIVGYKGRALVVVS 101


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 425 SIDLVGLAGRAVVLIS 378
           +I +VG  GRA+V++S
Sbjct: 86  TIKIVGYKGRALVVVS 101


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -2

Query: 349 PAWESQIWTK 320
           PAW++ +W K
Sbjct: 420 PAWKTHVWKK 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,789
Number of Sequences: 438
Number of extensions: 2345
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)