Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C11f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37980.1 68415.m04662 expressed protein similar to axi 1 [Nic... 30 0.82
At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.1
At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.1
At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.1
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 28 3.3
At3g02750.1 68416.m00267 protein phosphatase 2C family protein /... 28 4.4
At1g04980.1 68414.m00497 thioredoxin family protein similar to S... 27 5.8
At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR... 27 7.7
>At2g37980.1 68415.m04662 expressed protein similar to axi 1
[Nicotiana tabacum] GI:559921; contains Pfam profile
PF03138: Plant protein family
Length = 638
Score = 30.3 bits (65), Expect = 0.82
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 88 SSRRNNTDEQRCVLGLQDLKISKKVEDGTEQAQGATTSAPSPLGKS 225
+S R + C ++ IS ++DG QG S+PS +G S
Sbjct: 32 TSERPSISSDYCNTNTVNIAISPDIDDGETGLQGGACSSPSSIGSS 77
>At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 462
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +1
Query: 253 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSL 432
VLD T T Y FY + F P ET N +DI T +P P +
Sbjct: 125 VLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPGVPPMKGSDM 184
Query: 433 SQRSLSYQTDDLYE 474
+ L + D++Y+
Sbjct: 185 PKAVLE-RDDEVYD 197
>At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 446
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +1
Query: 253 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSL 432
VLD T T Y FY + F P ET N +DI T +P P +
Sbjct: 125 VLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPGVPPMKGSDM 184
Query: 433 SQRSLSYQTDDLYE 474
+ L + D++Y+
Sbjct: 185 PKAVLE-RDDEVYD 197
>At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 451
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +1
Query: 253 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSL 432
VLD T T Y FY + F P ET N +DI T +P P +
Sbjct: 125 VLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPGVPPMKGSDM 184
Query: 433 SQRSLSYQTDDLYE 474
+ L + D++Y+
Sbjct: 185 PKAVLE-RDDEVYD 197
>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
similarity to mannosidase [gi:5359712] from Cellulomonas
fimi
Length = 944
Score = 28.3 bits (60), Expect = 3.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 343 WESQIWTKLSHLIVHKNYN 287
W SQ+WTK + +++ KN N
Sbjct: 640 WSSQMWTKYTGVLIWKNQN 658
>At3g02750.1 68416.m00267 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2C;
PP2C (GI:3643088) [Mesembryanthemum crystallinum];
contains Pfam PF00481 : Protein phosphatase 2C domain;
Length = 492
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +1
Query: 157 KVEDGTEQAQGATT-----SAPSPLGKSRPVGAIESFVLDNTQ 270
K+EDG E+ ATT S PS LG+S V + + LD ++
Sbjct: 409 KLEDGEEEELKATTEDDDASGPSGLGRSSTVRSGKEIALDESE 451
>At1g04980.1 68414.m00497 thioredoxin family protein similar to
SP|Q63081 Protein disulfide isomerase A6 precursor (EC
5.3.4.1) {Rattus norvegicus}; contains Pfam profile
PF00085: Thioredoxin
Length = 443
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 187 GATTSAPSPLGKSRPVGAIESFVLDNTQQN 276
G+ S+P P +R AIESF L+ + N
Sbjct: 243 GSDKSSPVPYEGARSASAIESFALEQLESN 272
>At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR1)
identical to microtubule organization 1 protein
GI:14317953 from [Arabidopsis thaliana]
Length = 1978
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +1
Query: 271 QNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQRSLS 450
QN + + Y R + K A R + ++ ++ ALP+ S+ SL + L
Sbjct: 1816 QNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSSLALPSPDIPSLSSLDVKPLM 1875
Query: 451 YQTDDLY 471
DLY
Sbjct: 1876 NPRSDLY 1882
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,752,181
Number of Sequences: 28952
Number of extensions: 188281
Number of successful extensions: 502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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