Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 29 0.56
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 27 1.7
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 27 2.2
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 26 3.9
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 3.9
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 26 3.9
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 9.0
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 9.0
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb... 25 9.0
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 28.7 bits (61), Expect = 0.56
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 247 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 390
++ G L G + ++N G E D L N RYL V L N++TT
Sbjct: 44 NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -3
Query: 192 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 58
FPVL QI+P P L + R F+ S+ SP++ + R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = -2
Query: 244 QERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEA 65
+ V L LP+ G VES + P ALP PLSFS P ++ PE+
Sbjct: 398 ENELVKLFFLPLDGD-----VESPHPTSTMPE-ALPREPLSFSLPEKAPEKATNISIPES 451
Query: 64 A 62
A
Sbjct: 452 A 452
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 226 LSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 101
+SIL V+GP + R+ + G T G L + + SF +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 295 DKSLHQLRTAMHHHPPNQERAVNLSILPV 209
D +LH + +H + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 261 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 166
T R+ K + RCP ++R+P L IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 4 VLTVNMSSSDPPTLLQWLGGQLPGNQRF 87
V+++ ++ P +LQW GG+ G+ F
Sbjct: 706 VISIAKANPTFPIVLQWTGGRAGGHHSF 733
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 289 ICLVNSGNERDSSLLNRRRYL 351
+CL N +D LLNR RY+
Sbjct: 227 LCLWNHAYYKDYGLLNRSRYI 247
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 189 PVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPAEPL 49
PV S Q+ P + V + Q Y P SP V +PA P+
Sbjct: 374 PVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPM 420
>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 40 TLLQWLGGQLPGNQRFWTPGGVWLQS*NL 126
TLLQ LG +P G VW+ S NL
Sbjct: 180 TLLQTLGSYIPFEIAVGMNGRVWVNSENL 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,864
Number of Sequences: 5004
Number of extensions: 42716
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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