Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0189 + 32214702-32215154                                         29   1.7  
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217...    29   2.3  
07_01_0130 - 963856-965454                                             28   4.0  
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    27   6.9  
02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307...    27   6.9  
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341...    27   9.1  
05_05_0213 + 23307403-23307573,23308691-23308810                       27   9.1  

>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 169 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 62
           AA + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 30  AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>02_04_0451 +
           23021139-23021269,23021366-23021498,23021594-23021789,
           23023376-23023737,23024049-23024363
          Length = 378

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -2

Query: 286 LHQLRTAMHHHP--PNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSF 113
           LH L T     P  P +  +   +ILP   PG  S + S    G TP G +   P  F F
Sbjct: 313 LHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 283 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 185
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
            20712000-20712293,20712603-20712728,20712827-20712896,
            20712992-20713182,20713394-20713519,20713878-20714279,
            20714364-20714758,20714861-20715315,20715403-20715524,
            20715653-20715693,20716026-20716129,20716363-20716576,
            20717667-20717780,20718576-20718612
          Length = 1046

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 188  PC*VKLSRRLHSWWCPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSNVGGSL 27
            PC   L R   S W   V++   Q C  + P  +   +P   PP   S VGG L
Sbjct: 936  PCKTSLPRESASAWWTQVDTVSGQGCGESSPLCRPPAYPPE-PPVVLSLVGGQL 988


>02_05_0841 +
           32129863-32130294,32130395-32130459,32130565-32130774,
           32130943-32131024
          Length = 262

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 202 PGEISRVESN*AAGSTPGGALPS-IPLSFSFAT--ILPPESKIFGFPEAARRA 53
           PGE+S +ES+ A G      LPS    S   AT   +PP ++I  F  AA  A
Sbjct: 176 PGEVSDLESDLAGGQKRSRPLPSAATASAQQATRPKIPPAAEIEAFFAAAEEA 228


>06_02_0257 -
           13533689-13533714,13533799-13533925,13534013-13534121,
           13534193-13534272,13534758-13534979,13536070-13536318,
           13537032-13537484,13539834-13540556
          Length = 662

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 166 AGSTPGGALPSIPLSFSFATILPPESKIFGFP 71
           + +  GG  P +  SF    IL P+SK++GFP
Sbjct: 72  SSAAAGGGGPGMTTSFR---ILCPQSKVYGFP 100


>05_05_0213 + 23307403-23307573,23308691-23308810
          Length = 96

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 468 LRASQTCYCSISCGSK--TPVPLRRILIRRQ*VARHEAAHT*IT-TPI 334
           LRAS  C CS++ GS+  TP P  +  +R     R EA +T  T TP+
Sbjct: 42  LRASVCCRCSVAAGSQNITPFPDLKFELR----TRQEAKNTLNTCTPL 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,258,373
Number of Sequences: 37544
Number of extensions: 375711
Number of successful extensions: 1019
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)