Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304C10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8) 34 0.082
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_25769| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_54484| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_41723| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_21596| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_30664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 29 1.8
SB_48355| Best HMM Match : Herpes_US9 (HMM E-Value=4.7) 29 2.3
SB_17609| Best HMM Match : Herpes_US9 (HMM E-Value=4.7) 29 2.3
SB_28753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0) 28 5.4
SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21) 27 7.1
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 505 DSFSVARVRPRTSKGITD 452
D+ SVARVRPRTSKGITD
Sbjct: 34 DTVSVARVRPRTSKGITD 51
>SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 505 DSFSVARVRPRTSKGITD 452
D+ SVARVRPRTSKGITD
Sbjct: 132 DTVSVARVRPRTSKGITD 149
>SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 505 DSFSVARVRPRTSKGITD 452
D+ SVARVRPRTSKGITD
Sbjct: 64 DTVSVARVRPRTSKGITD 81
>SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 505 DSFSVARVRPRTSKGITD 452
D+ SVARVRPRTSKGITD
Sbjct: 64 DTVSVARVRPRTSKGITD 81
>SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 505 DSFSVARVRPRTSKGITD 452
D+ SVARVRPRTSKGITD
Sbjct: 64 DTVSVARVRPRTSKGITD 81
>SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8)
Length = 86
Score = 33.9 bits (74), Expect = 0.082
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -2
Query: 505 DSFSVARVRPRTSKGITD 452
D+ SVA VRPRTSKGITD
Sbjct: 64 DTVSVAHVRPRTSKGITD 81
>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 31.9 bits (69), Expect = 0.33
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 225 CQSFRCPGLVRFPVLSQIKPQ-APLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPAEPL 49
C S +CPG V +P + P+ AP P R++ L SPRSP++ SR P E +
Sbjct: 343 CASGKCPGCVYYPGMVPRSPRDAP--KEP-REYASPPPLPSKSPRSPRTSESRSPPREEM 399
>SB_25769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -2
Query: 505 DSFSVARVRPRTSKGITD 452
D+ SVARVR +TSKGITD
Sbjct: 64 DTVSVARVRAKTSKGITD 81
>SB_54484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +3
Query: 459 MPLDVLGRTRATLKES 506
MPLDVLGRTRATL S
Sbjct: 1 MPLDVLGRTRATLTVS 16
>SB_41723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +3
Query: 459 MPLDVLGRTRATLKES 506
MPLDVLGRTRATL S
Sbjct: 1 MPLDVLGRTRATLTVS 16
>SB_21596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +3
Query: 459 MPLDVLGRTRATLKES 506
MPLDVLGRTRATL S
Sbjct: 1 MPLDVLGRTRATLTVS 16
>SB_30664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 459 MPLDVLGRTRATL 497
MPLDVLGRTRATL
Sbjct: 1 MPLDVLGRTRATL 13
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 214 PVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 107
P S PG S A STPG A+ SIP + S +T
Sbjct: 1015 PSSTPGAASSTTPGAAPSSTPGAAMSSIPGATSSST 1050
>SB_48355| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)
Length = 98
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 470 CPGPHARYTEGIS 508
C GPHARYT+G++
Sbjct: 2 CSGPHARYTDGVN 14
>SB_17609| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)
Length = 98
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 470 CPGPHARYTEGIS 508
C GPHARYT+G++
Sbjct: 2 CSGPHARYTDGVN 14
>SB_28753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 470 CPGPHARYTEGIS 508
C GPHARYT+G++
Sbjct: 2 CSGPHARYTDGVN 14
>SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +3
Query: 459 MPLDVLGRTRATLKESACSP 518
MPLDVL RTRATL S P
Sbjct: 1 MPLDVLDRTRATLTVSRVFP 20
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 113 CNHTPPGVQNLWFPGSCPPSHCSNVGGSLDD 21
C+ PG + PGSC P +C N+ GSL D
Sbjct: 854 CDRCMPG--SYGGPGSCKPCNC-NMAGSLSD 881
>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 460
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 104 TPPGV-QNLWFPGSCPPSHCSNVGG 33
+P GV +N W PGS S+C++ GG
Sbjct: 174 SPYGVDENSWSPGSSQSSNCTSPGG 198
>SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)
Length = 858
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 94 PGGVWLQS*NLKELTEGHHQEWSLRLNLTQH---GKSHQARTPEGLTD*QLFLDSVGGGA 264
P W+ + NLK + G WSL L+ G H P+ LTD L + S+ GA
Sbjct: 475 PDDSWVSTSNLKTASPGEQYSWSLFRALSHMLCIGYGHY--PPQNLTDLWLTVCSMTAGA 532
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 278 LVERFVWLIPVTNETLAC 331
LV RFV ++PVT+ T AC
Sbjct: 1290 LVARFVRMLPVTHHTAAC 1307
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 146 CPSVNSFKFQLCNHTPPGVQNL 81
CP + S F CN T GV+ L
Sbjct: 199 CPGLTSINFSYCNITDKGVEEL 220
>SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 201 LVRFPVLSQIKPQAPLL--VVPFRQFL*VSALQPYSPRSPKS 82
L R LS + P + + VVPFR + + L P+ P SPKS
Sbjct: 39 LHRLESLSILSPASAAVEDVVPFRGDVFAAGLVPHPPDSPKS 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,368,526
Number of Sequences: 59808
Number of extensions: 374892
Number of successful extensions: 823
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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