Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304C10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    28   4.4  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   4.4  
At2g11620.1 68415.m01249 hypothetical protein                          27   7.7  

>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 127 KELTEGHHQEWSLRLNLTQHGKSHQARTPEG 219
           KEL+EG HQE   + N    GK ++ R P G
Sbjct: 238 KELSEGFHQERDGKKN--AEGKGYECRIPAG 266


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 116 LCNHTPPGVQNLWFPGSCPP 57
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 101 PPGVQNLWFPGSCPPSHCSNVGGS 30
           PPG  + WFP S P   C+N G S
Sbjct: 105 PPGANDHWFPYSDPA--CTNSGAS 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,963,154
Number of Sequences: 28952
Number of extensions: 259308
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)